View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10274_high_4 (Length: 459)

Name: NF10274_high_4
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10274_high_4
NF10274_high_4
[»] chr7 (1 HSPs)
chr7 (17-452)||(48660128-48660563)
[»] chr2 (3 HSPs)
chr2 (353-441)||(21982007-21982095)
chr2 (356-420)||(15867658-15867722)
chr2 (356-420)||(45198953-45199017)
[»] chr8 (2 HSPs)
chr8 (362-432)||(26788512-26788582)
chr8 (351-423)||(973819-973891)
[»] chr4 (2 HSPs)
chr4 (351-417)||(44530989-44531055)
chr4 (353-420)||(48438640-48438707)
[»] chr3 (1 HSPs)
chr3 (362-432)||(50274760-50274830)
[»] chr1 (2 HSPs)
chr1 (362-432)||(1460943-1461013)
chr1 (362-432)||(1498323-1498393)


Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 452
Target Start/End: Original strand, 48660128 - 48660563
Alignment:
Q  17 aacacttgccattggatcccatcgcctttctcagcaggtttgcaagtttttatctattagctttaagtagtatagtccgtatcaaattccctagttatgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48660128 aacacttgccattggatcccatcgcctttctcagcaggtttgcaagtttttatctattagctttaagtagtatagtccgtatcaaattccctagttatgt 48660227  T
Q  117 tcgtttggcactaagattcaaacaaatggggtgaagttaatttaagcttttgtctgcgttactcataactgtagtttaagtctggcaaattctgtaatac 216  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48660228 tcgtttggcactaaaattcaaacaaatggggtgaagttaatttaagcttttgtctgcgttactcataactgtagtttaagtttggcaaattctgtaatac 48660327  T
Q  217 tcctagggataatcatatatccccagaatcatttggagaaagttatcacatagggcatatggcgactacagaattacagcagatgtttccacagctgact 316  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48660328 tcataaggataatcatatatccccagaatcatttggagaaagttatcacatagggcatatggcgactacagaattacagcagatgtttccacagctgact 48660427  T
Q  317 gtgctttttctttattttattgacttcattcttaagggagctatcacaaaaagaatgacagcaattgaagaaatggcaggcatggatgtcctatgcagtg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48660428 gtgctttttctttattttattgacttcattcttaagggagctatcacaaaaagaatgacagcaattgaagaaatggcaggcatggatgtcctatgcagtg 48660527  T
Q  417 acaaaacgggtactcttacgcttaatcgcctctctg 452  Q
    ||||||||||||||||||||||||||||||| ||||    
T  48660528 acaaaacgggtactcttacgcttaatcgcctgtctg 48660563  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 441
Target Start/End: Complemental strand, 21982095 - 21982007
Alignment:
Q  353 ggagctatcacaaaaagaatgacagcaattgaagaaatggcaggcatggatgtcctatgcagtgacaaaacgggtactcttacgcttaa 441  Q
    ||||||||||| || || |||||||| || |||||||||||||| |||||||| |||||||||||||| || || ||||| || |||||    
T  21982095 ggagctatcaccaagaggatgacagccatcgaagaaatggcaggaatggatgttctatgcagtgacaagactggaactctcactcttaa 21982007  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 15867658 - 15867722
Alignment:
Q  356 gctatcacaaaaagaatgacagcaattgaagaaatggcaggcatggatgtcctatgcagtgacaa 420  Q
    ||||| ||||| |||||||| || |||||||||||||| || |||||||| || |||||||||||    
T  15867658 gctattacaaagagaatgactgccattgaagaaatggctggtatggatgttctttgcagtgacaa 15867722  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 45199017 - 45198953
Alignment:
Q  356 gctatcacaaaaagaatgacagcaattgaagaaatggcaggcatggatgtcctatgcagtgacaa 420  Q
    ||||||||||| ||||||||||| ||||| |||||||| || ||||||||  |||| ||||||||    
T  45199017 gctatcacaaagagaatgacagccattgaggaaatggctgggatggatgttttatgtagtgacaa 45198953  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 432
Target Start/End: Original strand, 26788512 - 26788582
Alignment:
Q  362 acaaaaagaatgacagcaattgaagaaatggcaggcatggatgtcctatgcagtgacaaaacgggtactct 432  Q
    ||||||||||||||||| ||||| |||||||| || |||||||| || |||||||| ||||| || |||||    
T  26788512 acaaaaagaatgacagctattgaggaaatggctggaatggatgttctctgcagtgataaaacaggaactct 26788582  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 423
Target Start/End: Complemental strand, 973891 - 973819
Alignment:
Q  351 agggagctatcacaaaaagaatgacagcaattgaagaaatggcaggcatggatgtcctatgcagtgacaaaac 423  Q
    |||| ||||| ||||| |||||||| || |||||||||||||| || ||||||||  |||| |||||||||||    
T  973891 agggtgctataacaaagagaatgactgctattgaagaaatggctggaatggatgtgttatgtagtgacaaaac 973819  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 417
Target Start/End: Original strand, 44530989 - 44531055
Alignment:
Q  351 agggagctatcacaaaaagaatgacagcaattgaagaaatggcaggcatggatgtcctatgcagtga 417  Q
    |||| |||||||| || || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  44530989 agggggctatcacgaagaggatgacagccattgaagagatggcaggcatggatgtgctgtgcagtga 44531055  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 420
Target Start/End: Complemental strand, 48438707 - 48438640
Alignment:
Q  353 ggagctatcacaaaaagaatgacagcaattgaagaaatggcaggcatggatgtcctatgcagtgacaa 420  Q
    |||||||| || || || |||||||| |||||||||||||| || |||||||| || |||||||||||    
T  48438707 ggagctattaccaagaggatgacagctattgaagaaatggccgggatggatgttctctgcagtgacaa 48438640  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 432
Target Start/End: Original strand, 50274760 - 50274830
Alignment:
Q  362 acaaaaagaatgacagcaattgaagaaatggcaggcatggatgtcctatgcagtgacaaaacgggtactct 432  Q
    ||||| ||||||||||| ||||| ||||||||||| |||||||| || || ||||||||||| || |||||    
T  50274760 acaaagagaatgacagctattgaggaaatggcagggatggatgttctctgtagtgacaaaaccggaactct 50274830  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 432
Target Start/End: Original strand, 1460943 - 1461013
Alignment:
Q  362 acaaaaagaatgacagcaattgaagaaatggcaggcatggatgtcctatgcagtgacaaaacgggtactct 432  Q
    ||||||||||||||||| ||||| |||||||| || |||||||| || |||||||| ||||| || |||||    
T  1460943 acaaaaagaatgacagctattgaggaaatggctggaatggatgttctttgcagtgataaaactggaactct 1461013  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 432
Target Start/End: Complemental strand, 1498393 - 1498323
Alignment:
Q  362 acaaaaagaatgacagcaattgaagaaatggcaggcatggatgtcctatgcagtgacaaaacgggtactct 432  Q
    ||||||||||||||||| ||||| |||||||| || |||||||| || |||||||| ||||| || |||||    
T  1498393 acaaaaagaatgacagctattgaggaaatggctggaatggatgttctttgcagtgataaaactggaactct 1498323  T

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