View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10274_high_5 (Length: 456)
Name: NF10274_high_5
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 446
Target Start/End: Original strand, 15148852 - 15149283
Alignment:
| Q |
17 |
agcaacatggccaaaactgaaattcccattacgctcagcaaccatgcctccacaagtaacaatggcaccattgttggttcttctaatttcttcctattga |
116 |
Q |
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| T |
15148852 |
agcaacatggccaaaactgaaattcccattacgctcagcaaccatgcctccacaagtagcaatggcaccattgttggttcttctaatttcttcctattga |
15148951 |
T |
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| Q |
117 |
tctcttgaaatgttttacaaaatcctttgtgtcacaatgagtttgtaatgctaacgtttgtgtcacaattaatttcaataatatccttcctgtaatggat |
216 |
Q |
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| T |
15148952 |
tctcttgaaatgttttacaaaatcctttgtgtcacactgagtttgtaatgctaacgtttgtgt--caattaatttcactaatatccttcctgtaatggat |
15149049 |
T |
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| Q |
217 |
aagtactatatccgat--nnnnnnnnngataagaactatatcctaaaaaagtaattaattctgggaatcgtttgcatctagcaaatccagcatgtgatga |
314 |
Q |
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| T |
15149050 |
aagtactatatccgataaaaaaaaaaagataagaactatatcctaaaaaagtaattaattctggtaatcgtttgcatctagcaaatccagcatgtgatga |
15149149 |
T |
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| Q |
315 |
aaaccagaaaaagaaaatcacatttattacaactaagaattttattaacgagaaaaaacatgaaattcacattgtacaatacttatctttagcccatttt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15149150 |
aaaccagaaaaagaaaatcacatttattacaactaagaattttattaacgagaaaaaacatgaaattcacattgtacaatacttatctttagcccatttt |
15149249 |
T |
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| Q |
415 |
ttcaaatga--attgatctataagctggcttcat |
446 |
Q |
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| T |
15149250 |
ttcaaatgaatatcgatctataagctggcttcat |
15149283 |
T |
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