View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10274_high_7 (Length: 406)
Name: NF10274_high_7
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 15 - 394
Target Start/End: Complemental strand, 6858658 - 6858279
Alignment:
| Q |
15 |
caaaaacagttgagagaagagccgaattctagatagaggcccgtcgtatcttgcatgtgaacgccctggaagctcctttataaacaccacatactcaatc |
114 |
Q |
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| T |
6858658 |
caaaaacagttgagataagagccaaattctagatagaggcccgtcgtatcttgcatgcgaacgcactagaagctcctttataaacaccacatactcaatc |
6858559 |
T |
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| Q |
115 |
tataagatatgcaccccaacttgttagctaggtagaatgcatcatgttttctcatatcttaaaaggtagaatgcatcacatctattattactctaatgtg |
214 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6858558 |
tataagatatgcacccccacttgttagctaggtagaatgcatcatgttttctcatatcttaaaaggtagaatgcatcacatctattattactctaatgtg |
6858459 |
T |
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| Q |
215 |
ttctcatattttaaatctcaacctttaaaccaatttttctccatttttaaaattctaaaactctcctctttatattacaatggtatatatatgtttcaca |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6858458 |
ttctcatattttaaatctcaacctttaaaccaatttttctccatttttaaaattctaaaactctcctctttatattacaatggtatacatatgtttcaca |
6858359 |
T |
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| Q |
315 |
ttatttgctcatgttgtttttcaacataagtaacctaactaatcactcaaaaggtaagaaatgtgctgctacatcgttct |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6858358 |
ttatttgctcatgttgtttttcaacataagtaacctaactaatcactcaaaaggtaagaaatgtgctgctacatcgttct |
6858279 |
T |
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