View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10274_low_11 (Length: 367)
Name: NF10274_low_11
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 5445185 - 5444830
Alignment:
| Q |
1 |
ccacactgcaatgcagctgtagcttgtaccaaggtcaatgcctatggctttgctttttcttgttgccattgcacttaatttgagaggagagaacaaaaga |
100 |
Q |
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| T |
5445185 |
ccacactgcaatgcagctgtagcttgtaccaaggtcaatgcctatggctttgctttttcttgttgccattgcacttaatttgagaggagagaacaaaaga |
5445086 |
T |
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| Q |
101 |
agaatggcgttttggttagtgaactgagaatatggatctgattgatcaaaaggtagtttttataggcctaagagaacatttttcagaaaagttggggaat |
200 |
Q |
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| T |
5445085 |
agaatggtgttttggttagtgaaccgagaatatggatctgattgatcaaaaggtagtttttataggcataagagaacatttttcagaaaagttggggaat |
5444986 |
T |
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| Q |
201 |
gaggaaggagtatggaaaatatacacggagaataattggccaagtgttgagggattggcaatttccaaagaacttggactgaggttgagggatttggcaa |
300 |
Q |
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| T |
5444985 |
gaggaaggagtatggaaaatatacacggagaataattgggcaagtgttgagggattggcaatttccaaagaacttggactgaggttgagggatttggcaa |
5444886 |
T |
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| Q |
301 |
tttcccatattcattgatccttgatcaactcattatttctacacataggaattcat |
356 |
Q |
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| T |
5444885 |
tttcccatattcattgatccttgatcaactcattatttctacacataggaattcat |
5444830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 5441378 - 5441427
Alignment:
| Q |
307 |
atattcattgatccttgatcaactcattatttctacacataggaattcat |
356 |
Q |
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| T |
5441378 |
atattcattgatccttgatcaactcattatttctacacattggaattcat |
5441427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 5441111 - 5441182
Alignment:
| Q |
79 |
tttgagaggagagaacaaaagaagaatggcgttttggttagtgaactgagaatatggatctgattgatcaaaa |
151 |
Q |
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| T |
5441111 |
tttgagaggagagaacaaaagaa-aatgatgttttgggtagtaaactgaaaatctggatgtgattgataaaaa |
5441182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 175 - 356
Target Start/End: Complemental strand, 10688291 - 10688119
Alignment:
| Q |
175 |
aacatttttcagaaaagttggggaatgaggaaggagtatggaaaatatacacggagaataattggccaagtgttgagggattggcaatttccaaagaact |
274 |
Q |
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| T |
10688291 |
aacatttttcagaaaagttggggaatt--------gtatggaaaatatacaaggagaataattgtgcaagtgttgtgggattggcaatttccaaagaact |
10688200 |
T |
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| Q |
275 |
tggactgaggttgagggatttggcaatttcccatattcattgatccttgatcaactcattatttctacacataggaattcat |
356 |
Q |
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| T |
10688199 |
tgaactgaggtt-cttgatttggcaatttccaatattcatagatgcttgatcaactcattatttctagatataggaattcat |
10688119 |
T |
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