View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10274_low_12 (Length: 363)
Name: NF10274_low_12
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 23129013 - 23128659
Alignment:
| Q |
1 |
gtttgaatcaactcccaacgtccgtttacaagccgttaattcaatggagaaactcgcagaagctgttaaaacgatgttaaaggaattcgaatcagctatt |
100 |
Q |
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| T |
23129013 |
gtttgaatcaacttccaacgtccgtttacaagccattaattcaatggagaaacttgcagaagctgttaaaacgatgttaaaggaattcgaatcagctatt |
23128914 |
T |
|
| Q |
101 |
cagaaagattcttcaaagaaacaagtctccggtggtggtgttcatcctctcacacgctatgtcatgaattacctaaccttcctcgccgattacggtggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23128913 |
cagaaagattcttcaaagaaacaagtctccggtggtggtgttcatcctctcacacgctatgtcatgaattacctaaccttcctcgccgattacggtggaa |
23128814 |
T |
|
| Q |
201 |
ttctcgctgatatcgtcttcgatatgccgcagtctccgttaccggagtcgtactatcgaagtcctatgcgcagcgagaattcatcgtcatcctcgtcatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23128813 |
ttctcgctgatatcgtcttcgatatgccgcagtctccgttaccggagtcgtactatcgaagtccgatgcgcagcgagaattcatcgtcatcctcgtcatc |
23128714 |
T |
|
| Q |
301 |
atcatcttcgtcggagatatcagaaaaaatcgcgtggctgatacttgttcttctc |
355 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23128713 |
atcatcttcatcggagatatcagaaaaaatcgcgtggctgatacttgttcttctc |
23128659 |
T |
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