View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10274_low_15 (Length: 318)
Name: NF10274_low_15
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 24373653 - 24373940
Alignment:
| Q |
1 |
caacatattttgccaaagcttannnnnnnacgagcaccttcattcacgagtcctcaaagttaatacatgttcatagtaaccaactaaccataaacaacca |
100 |
Q |
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| T |
24373653 |
caacatattttgacaaagcttatttttttacgagcaccttcattcacgagtcctcaaagttaatacatgttgatagtaaccaactaaccataaacaacca |
24373752 |
T |
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| Q |
101 |
gaaatgtctacaatacttccttnnnnnnnt-gtatataatactgagttaaaaattaaaattgaaaataattgcggcgtgtgcatagaactaaacaattgt |
199 |
Q |
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| T |
24373753 |
aaaatgtctacaatacttccttaaaaaaattgtatataatactgagttaaaaattaaagttgaaaataattgcggcgtgtgcatagaactaaacaattgt |
24373852 |
T |
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| Q |
200 |
acttccgtaaaaataaactacataattgtacttgttaatagaatgtcaaattgcactcgtaaacaa----atttgcctatcgaattct |
283 |
Q |
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| T |
24373853 |
acttccgtaaaaataaactacacaattgtacctgttaatagaatgtcaaattgtacttgtaaacaaaaacatttgcctatcgaattct |
24373940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 299
Target Start/End: Original strand, 24373958 - 24373989
Alignment:
| Q |
268 |
ttgcctatcgaattctatgttggagtgaaaca |
299 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
24373958 |
ttgcctatcgaattctatgttggagtgaaaca |
24373989 |
T |
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