View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10274_low_16 (Length: 307)
Name: NF10274_low_16
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 23 - 292
Target Start/End: Original strand, 42183039 - 42183308
Alignment:
| Q |
23 |
ctgctctaggtgctaatgctatcattgataatggcggtgtatccttaaattttcaaccttttcacaacatttctgcctccaacacaaccctcaaaggtta |
122 |
Q |
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| T |
42183039 |
ctgctctaggtgctaatgctatcattgataatggtggtgtatccttaaattttcaaccttttcacaacatttctgcctccaacacaaccctcaaaggtta |
42183138 |
T |
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| Q |
123 |
atttgtgtttatttcttattgttttccatcaatcaataatatatagaaaaataagtagtgatcagaacnnnnnnngttctgtacaagtttctgaagtctg |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
42183139 |
atttgtgtttatttcttattgttttccatcaatcaataatatatagaaacataagtagtggtcagaacaaaaaaagttctgtacaagtttctgaagtctg |
42183238 |
T |
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| Q |
223 |
aacatacttgtgtttgttgttgtcacagcaggtggaatggcggcttcaataggaatagggtatcctcctt |
292 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42183239 |
aacatacttgtgtttgtggttgtcacagcaggtggaatggcggcttcaataggaatagggtatcctcctt |
42183308 |
T |
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