View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10274_low_18 (Length: 286)
Name: NF10274_low_18
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 22295076 - 22295335
Alignment:
| Q |
5 |
atatagttaaaaaacacttcaaacataagcggtgtggagttgtttgggcaattcaaactttcacaaagtgaccaatagagtcttttcttctacgtcgtaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||| |||||| ||||||||||||||| | |||| |
|
|
| T |
22295076 |
atatagttaaaaaacacttcaaacataagcggcgtggagttgtttgggccattcaaactctcacaaggtgacc----cagtcttttcttctactttgtaa |
22295171 |
T |
|
| Q |
105 |
tacacaatatagtgtgagcaaaacaatctaattatataatttaaatgtttaaaagtttctgcaaactatgtttttgtgaatgtcagggagcaacgaaaat |
204 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
22295172 |
tgcacaatatagtgtgagcaaaacaatctaattatataatttaaatgtttaaaagtttctgcaaactatgtttttgtgaatgtgagggagcaacgaaatt |
22295271 |
T |
|
| Q |
205 |
tctctggctttatattttgggctttgatttagaagatctatttctttcaaatcaatagttcttg |
268 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22295272 |
tctctggctatatattttgggctttgatttagaatatctatttctttcaaatcaatagttcttg |
22295335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 22289922 - 22290050
Alignment:
| Q |
112 |
tatagtgtgagcaaaacaatctaattatataatttaaatgtttaaaagtttctgcaaactatgt-ttttgtgaa-tgtcagggagcaacgaaaattctct |
209 |
Q |
| |
|
|||||| | |||||||||||| |||| | | |||||| ||||||||||||| |||||||||| ||||||||| |||||||||| | | || ||||| |
|
|
| T |
22289922 |
tatagtatcagcaaaacaatcaaattctttctcttaaatttttaaaagtttctacaaactatgtgttttgtgaattgtcagggagtagcaaagtatctct |
22290021 |
T |
|
| Q |
210 |
ggctttatattttgggctttgatttagaa |
238 |
Q |
| |
|
| | ||||||||||||||| |||||||| |
|
|
| T |
22290022 |
tgttatatattttgggcttttatttagaa |
22290050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 22294860 - 22294813
Alignment:
| Q |
152 |
tttaaaagtttctgcaaactatgt-ttttgtgaatgtcagggagcaac |
198 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||| ||||||||| |
|
|
| T |
22294860 |
tttaaaagtttctgcaaactatgtattttgtgaacgtctgggagcaac |
22294813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University