View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10274_low_23 (Length: 252)
Name: NF10274_low_23
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_low_23 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 45271113 - 45270877
Alignment:
| Q |
13 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45271113 |
caaagacagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggaggctgttaacattcttatgtatggtgatggccct |
45271014 |
T |
|
| Q |
113 |
gcaaaaaccattgtcactggtagtaagaaccaaaacgccggtaccaatatacagaacagtgccccctttggtacgtaattcagttattatcgatcaaagc |
212 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| ||||||||||| | |||||||| |||| ||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
45271013 |
gcaaagaccattgtcactggtagaaagaaccaaatggccggtaccaacacacagaacactgccaccttttgtacgtaattcagtta-tatcgatcaaagc |
45270915 |
T |
|
| Q |
213 |
ttttttattttatttaattaattgtgtaccttatgaatga |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45270914 |
--ttttattttatttaattaattgtgtaccttatgaatga |
45270877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 45282887 - 45282760
Alignment:
| Q |
13 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282887 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
45282788 |
T |
|
| Q |
113 |
gcaaaaaccattgtcactggtagtaaga |
140 |
Q |
| |
|
|||| ||||||||||||||||| |||| |
|
|
| T |
45282787 |
gcaaggaccattgtcactggtagaaaga |
45282760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 45274646 - 45274410
Alignment:
| Q |
13 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
112 |
Q |
| |
|
||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274646 |
caaaggcaggtattttatctacgttaaggctggtgtctatgacgaatacatcactgtacccaaggatgctgttaacattcttatgtatggtgatggccct |
45274547 |
T |
|
| Q |
113 |
gcaaaaaccattgtcactggtagtaagaaccaaaacgccggtaccaatatacagaacagtgccccctttggtacgtaattcagttattatcgatcaaagc |
212 |
Q |
| |
|
|||| ||||||||||| ||||| |||||| ||||||||||| | | | | ||| |||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
45274546 |
gcaaggaccattgtcaccggtagaaagaactttgctgccggtaccaagaccatgcaaaccgccaccttcggtacgtaattcaattattatctatcaaagc |
45274447 |
T |
|
| Q |
213 |
-ttttttattttatttaattaattgtgtaccttatga |
248 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
45274446 |
tttttttattttatttgattaattgtataccttatga |
45274410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 45294275 - 45294036
Alignment:
| Q |
13 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||| || |||||||| |||||||||||| | ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
45294275 |
caaaggcagatatactatctacgttaaggctggcgtctatgatgaatacatcactattcccaaagacgctgttaacattcttatgtatggtgatggcccc |
45294176 |
T |
|
| Q |
113 |
gcaaaaaccattgtcactggtagtaagaaccaaaacgccggtaccaatatacagaacagtgccccctttggtacgtaattcagttattatcgatcaaagc |
212 |
Q |
| |
|
| ||| |||||||| || || || |||||| || ||| ||| | | | | ||| |||| |||| |||||||| |||| |||||||| | | |
|
|
| T |
45294175 |
ggaaagaccattgttaccggaagaaagaacggtgctgctggtgtcaagaccatgcaaaccgccaccttcggtaagtaattcaattatcatcgatcacaac |
45294076 |
T |
|
| Q |
213 |
ttttttattttatttaattaattgtgtaccttatgaatga |
252 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45294075 |
ttttttattttatttaataaattgtgtaccttatgaatga |
45294036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 45303235 - 45302996
Alignment:
| Q |
13 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||| || |||||||| |||||||||||| | ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
45303235 |
caaaggcagatatactatctacgttaaggctggcgtctatgatgaatacatcactattcccaaagacgctgttaacattcttatgtatggtgatggcccc |
45303136 |
T |
|
| Q |
113 |
gcaaaaaccattgtcactggtagtaagaaccaaaacgccggtaccaatatacagaacagtgccccctttggtacgtaattcagttattatcgatcaaagc |
212 |
Q |
| |
|
| ||| |||||||| || || || |||||| || ||| ||| | | | | ||| |||| |||| |||||||| |||| |||||||| | | |
|
|
| T |
45303135 |
ggaaagaccattgttaccggaagaaagaacggtgctgctggtgtcaagaccatgcaaaccgccaccttcggtaagtaattcaattatcatcgatcacaac |
45303036 |
T |
|
| Q |
213 |
ttttttattttatttaattaattgtgtaccttatgaatga |
252 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45303035 |
ttttttattttatttaataaattgtgtaccttatgaatga |
45302996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 45282723 - 45282649
Alignment:
| Q |
177 |
cctttggtacgtaattcagttattatcgatcaaagcttttttattttatttaattaattgtgtaccttatgaatga |
252 |
Q |
| |
|
|||| ||||| ||||||| |||| |||||||||| |||||||||||||||||||||||| | || ||||||||||| |
|
|
| T |
45282723 |
ccttcggtacttaattcaattatcatcgatcaaaacttttttattttatttaattaattattta-cttatgaatga |
45282649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 38583289 - 38583244
Alignment:
| Q |
15 |
aaggcagatatgttatctacgttaaggccggtgtctatgacgaata |
60 |
Q |
| |
|
|||| |||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
38583289 |
aaggtagatatgtcatctacgtcaaggctggtgtctatgacgaata |
38583244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University