View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10274_low_24 (Length: 251)
Name: NF10274_low_24
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_low_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 42182516 - 42182758
Alignment:
| Q |
12 |
caaaggccgagaatggcggcaacccataacacaatcataaatctctccattccaacacctgtcttctttacatgcctcaagcctagcctttgttgctgta |
111 |
Q |
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| T |
42182516 |
caaaggccgagaatggcggcaacccataacacaatcataaatctctccattccaacacctgtcttctttacatgcctcaagcctagcctttgttgctgta |
42182615 |
T |
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| Q |
112 |
ctactatact---atatattatcatatcatattcattatcatttcattacccctactcctatttagaaacagcactatcttccttacctgaaaaagttaa |
208 |
Q |
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| T |
42182616 |
ctactatactactatatattaccatatcatatgcattatcatttcattacccctactcctatttagaaacagcactatcttccttacctgaaaaagttaa |
42182715 |
T |
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| Q |
209 |
ttttggtggttgattctttttactattggtataatataacaag |
251 |
Q |
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| T |
42182716 |
ttttggtggttgattctttttactattggcataatataacaag |
42182758 |
T |
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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 17366146 - 17366217
Alignment:
| Q |
12 |
caaaggccgagaatggcggcaacccataacacaatcataaatctctccattccaacacctgtcttctttaca |
83 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |
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| T |
17366146 |
caaaggctgagaatggcggcaacccataacacaatcttaaatctctccattccaacatctgtcctctttaca |
17366217 |
T |
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