View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10274_low_28 (Length: 250)

Name: NF10274_low_28
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10274_low_28
NF10274_low_28
[»] chr6 (11 HSPs)
chr6 (15-250)||(1240960-1241195)
chr6 (165-250)||(13041973-13042058)
chr6 (169-250)||(12350277-12350358)
chr6 (165-250)||(28541801-28541886)
chr6 (157-250)||(29182584-29182677)
chr6 (187-250)||(30736442-30736505)
chr6 (181-250)||(16435796-16435865)
chr6 (187-250)||(31013709-31013772)
chr6 (191-250)||(31833779-31833838)
chr6 (187-250)||(7271292-7271356)
chr6 (187-250)||(1870556-1870620)
[»] chr7 (14 HSPs)
chr7 (165-250)||(4040948-4041033)
chr7 (165-250)||(24300358-24300443)
chr7 (165-250)||(40232329-40232414)
chr7 (165-250)||(41427862-41427947)
chr7 (166-250)||(25943859-25943943)
chr7 (165-250)||(27596299-27596384)
chr7 (165-250)||(29737406-29737491)
chr7 (165-250)||(31689567-31689652)
chr7 (181-250)||(6392288-6392357)
chr7 (165-243)||(21443019-21443097)
chr7 (165-250)||(38276759-38276844)
chr7 (165-248)||(22337711-22337795)
chr7 (187-250)||(48838082-48838146)
chr7 (165-250)||(22619525-22619610)
[»] chr5 (6 HSPs)
chr5 (165-250)||(14044057-14044142)
chr5 (165-250)||(36982187-36982272)
chr5 (197-250)||(42897588-42897641)
chr5 (165-250)||(2970878-2970963)
chr5 (165-250)||(33403195-33403280)
chr5 (165-250)||(36768803-36768888)
[»] chr4 (20 HSPs)
chr4 (165-250)||(40071663-40071748)
chr4 (165-250)||(54438371-54438456)
chr4 (158-250)||(51744698-51744790)
chr4 (167-250)||(37064967-37065050)
chr4 (165-250)||(17493754-17493839)
chr4 (179-250)||(47199501-47199572)
chr4 (165-250)||(925350-925435)
chr4 (165-250)||(34408871-34408956)
chr4 (165-250)||(39787993-39788079)
chr4 (165-250)||(20789674-20789759)
chr4 (165-250)||(10441144-10441230)
chr4 (187-250)||(3172233-3172296)
chr4 (165-243)||(21240327-21240405)
chr4 (193-250)||(33800996-33801053)
chr4 (187-243)||(46870630-46870686)
chr4 (199-243)||(53509863-53509907)
chr4 (169-250)||(28690109-28690189)
chr4 (187-244)||(41555485-41555542)
chr4 (189-250)||(32218151-32218212)
chr4 (187-250)||(28910370-28910434)
[»] chr3 (10 HSPs)
chr3 (165-250)||(40496774-40496859)
chr3 (165-250)||(41346048-41346133)
chr3 (165-250)||(48169725-48169810)
chr3 (165-250)||(54014238-54014323)
chr3 (165-250)||(50676476-50676561)
chr3 (165-250)||(51545663-51545748)
chr3 (165-250)||(12568222-12568307)
chr3 (165-250)||(13544686-13544771)
chr3 (179-250)||(24709025-24709096)
chr3 (165-250)||(30459807-30459892)
[»] chr2 (13 HSPs)
chr2 (165-250)||(45080632-45080717)
chr2 (165-250)||(2110221-2110306)
chr2 (165-250)||(43370675-43370760)
chr2 (165-250)||(4828303-4828388)
chr2 (165-250)||(29193989-29194074)
chr2 (166-250)||(28585897-28585981)
chr2 (189-242)||(8381538-8381591)
chr2 (165-250)||(25898464-25898549)
chr2 (169-250)||(42847121-42847202)
chr2 (199-242)||(39646548-39646591)
chr2 (181-250)||(31922053-31922122)
chr2 (201-250)||(1779286-1779335)
chr2 (157-197)||(29194255-29194295)
[»] chr1 (13 HSPs)
chr1 (165-250)||(46370928-46371013)
chr1 (165-250)||(38321646-38321731)
chr1 (156-250)||(46862548-46862642)
chr1 (165-250)||(1929430-1929515)
chr1 (165-250)||(28036915-28037000)
chr1 (165-250)||(32045834-32045919)
chr1 (165-250)||(39151111-39151196)
chr1 (165-250)||(8229064-8229149)
chr1 (181-250)||(50777014-50777083)
chr1 (165-250)||(1207664-1207749)
chr1 (191-250)||(38817801-38817860)
chr1 (187-250)||(40562648-40562711)
chr1 (191-250)||(9129616-9129675)
[»] chr8 (11 HSPs)
chr8 (156-250)||(27820765-27820859)
chr8 (165-250)||(38070109-38070194)
chr8 (165-250)||(11254501-11254586)
chr8 (169-250)||(17493531-17493612)
chr8 (165-250)||(18575029-18575114)
chr8 (169-250)||(39906916-39906996)
chr8 (165-250)||(17336184-17336269)
chr8 (167-250)||(12738580-12738663)
chr8 (165-250)||(9753771-9753856)
chr8 (192-250)||(13243760-13243818)
chr8 (165-238)||(11146771-11146844)
[»] scaffold0318 (1 HSPs)
scaffold0318 (165-250)||(16358-16443)
[»] scaffold0047 (1 HSPs)
scaffold0047 (165-250)||(69754-69839)
[»] scaffold0519 (1 HSPs)
scaffold0519 (165-250)||(10807-10892)
[»] scaffold0061 (1 HSPs)
scaffold0061 (165-250)||(10231-10316)
[»] scaffold0532 (1 HSPs)
scaffold0532 (184-250)||(3834-3900)
[»] scaffold1194 (1 HSPs)
scaffold1194 (189-245)||(1004-1060)
[»] scaffold0016 (1 HSPs)
scaffold0016 (165-210)||(92374-92419)


Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 1240960 - 1241195
Alignment:
Q  15 gacagttggatgcataaaaggacnnnnnnnctagctagctaacgttgtttgaatcaaaaaagaaaacattccaacaatttggaatatgagacaggtggca 114  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1240960 gacagttggatgcataaaaggacaaaaaaactagctagctaacgttgtttgaatcaaaaaagaaaacattccaacaatttggaatatgagacaggtggca 1241059  T
Q  115 tcaaaggatgttactttctgtctcctctcttcccacacaacataaataccactccctccgtctttgaataagtgacctatttgtaaaaaatatttgtccc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||| ||||||||||||||||||||||||    
T  1241060 tcaaaggatgttactttctgtctcctctcttcccacacaacataaatactactccctccgtccctgaataagtgatctatttgtaaaaaatatttgtccc 1241159  T
Q  215 acaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||| |||| ||||||||||||||||||||||||    
T  1241160 acaatacttgaacttctcagatttctaagcaaaatt 1241195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 13041973 - 13042058
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  13041973 actccctccgtccttgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttttaagcaaaatt 13042058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 12350277 - 12350358
Alignment:
Q  169 cctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  12350277 cctccgtctctgaataagtgacctatttgtaaaaagtatttgtcccacaatatttgaccttctcaaatttctaagcaaaatt 12350358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 28541886 - 28541801
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  28541886 actccctccgtctctgaataagtgacttatttgtaaaaaatatttatcccacaatacttgaccttctcagatttctaggcaaaatt 28541801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 29182584 - 29182677
Alignment:
Q  157 taaataccactccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  29182584 taaatactactccctctgtccctgaataagtgacctatttgtaaaaaatatttgtcctacaatacttgaccttctcagatttctaggcaaaatt 29182677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 30736442 - 30736505
Alignment:
Q  187 tgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30736442 tgacctatttgaaaaaaatatttgtcccacaatatttgatcttctcagatttctaagcaaaatt 30736505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 16435796 - 16435865
Alignment:
Q  181 aataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||| |||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  16435796 aataaatgacttatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaaggaaaatt 16435865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 31013772 - 31013709
Alignment:
Q  187 tgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||| ||||||||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  31013772 tgacctatttgaaaaaaatatttgttccacaatacttgatcttctcagatttctaagcagaatt 31013709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 31833838 - 31833779
Alignment:
Q  191 ctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||| |||||||||||||||||| ||| ||||||||||||||||| |||||| ||||    
T  31833838 ctatttgaaaaaaatatttgtcccacgatacttgaccttctcagatttttaagcataatt 31833779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 7271356 - 7271292
Alignment:
Q  187 tgacctatttgtaaaaaa-tatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||| |||||| ||||||||||| |||| |||||||||| ||||||||||||| ||||    
T  7271356 tgacctatttgaaaaaaaatatttgtcccataatacttgaccttcttagatttctaagcagaatt 7271292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 1870556 - 1870620
Alignment:
Q  187 tgacctatttgtaaaa-aatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||| |||| ||||||||| | |||||| ||||||||||||||||| |||||| ||||    
T  1870556 tgacctatttggaaaaaaatatttgttcaacaatacttgaccttctcagatttttaagcagaatt 1870620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 4040948 - 4041033
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4040948 actccctccgtctctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatt 4041033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 24300443 - 24300358
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  24300443 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttatcaaatttctaagcaaaatt 24300358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 40232414 - 40232329
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  40232414 actccctccgtccttgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaagcaaaatt 40232329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 41427947 - 41427862
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41427947 actccctccgtccttaaataagtgacctatttgtaaaaaatatttgtcccacaatatttgatcttctcagatttctaagcaaaatt 41427862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 166 - 250
Target Start/End: Complemental strand, 25943943 - 25943859
Alignment:
Q  166 ctccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25943943 ctccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatt 25943859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 27596384 - 27596299
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  27596384 actccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaggcaaaatt 27596299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 29737406 - 29737491
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  29737406 actccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttcttagatttctaagcaaaatt 29737491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 31689652 - 31689567
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||| ||||  ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  31689652 actcccttcgtccctgaataagtgacctatttgtaaaaaatatctgtcccacaatacttgaccttctcagatttctaagcaaaatt 31689567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 6392288 - 6392357
Alignment:
Q  181 aataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  6392288 aataagtgatctatttgtaaaaaatatttgtcccacaatactttaccttctcagatttctaagcaaaatt 6392357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 21443097 - 21443019
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaag 243  Q
    ||||||||||||  | ||||  ||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||    
T  21443097 actccctccgtccctcaatacttgacctatttgaaaaaaatatttgtcccacaatacttgaccttctcagatttttaag 21443019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 38276844 - 38276759
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  | ||||  ||||||||||| |||||||||||||||||||||| |||||||| ||| ||||||||||| ||||    
T  38276844 actccctccgtccctcaatacttgacctatttgaaaaaaatatttgtcccacaatacttgaccttttcatatttctaagcagaatt 38276759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 248
Target Start/End: Original strand, 22337711 - 22337795
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgt-aaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaa 248  Q
    ||||||||||||  |||||||||||||||||||| |||||| | |||||||| |||| |||||||||||| ||||  ||||||||    
T  22337711 actccctccgtccctgaataagtgacctatttgtaaaaaaaaaattgtcccaaaatacttgaccttctcaaattttaaagcaaaa 22337795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 48838082 - 48838146
Alignment:
Q  187 tgacctatttgtaaaa-aatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||| |||| |||||||||||||||||| ||||| ||||||||||| |||||| ||||    
T  48838082 tgacctatttgaaaaaaaatatttgtcccacaatacttgactttctcagatttttaagcagaatt 48838146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 22619525 - 22619610
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||||   |||||||||||||||||||||||| | | ||||  || |||| |||| ||||||| ||||  ||||||||||    
T  22619525 actccctccgttcctgaataagtgacctatttgtaaaataaaattgtttcaaaatacttgatcttctcaaattttaaagcaaaatt 22619610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 14044057 - 14044142
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14044057 actccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccataatatttgaccttctcagatttctaagcaaaatt 14044142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 36982187 - 36982272
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  36982187 actccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcatatttctaggcaaaatt 36982272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 42897641 - 42897588
Alignment:
Q  197 gtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42897641 gtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatt 42897588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 2970963 - 2970878
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  | ||||  ||||||||||| |||||||||||||||||||||| ||||| |||||| ||||||||||| ||||    
T  2970963 actccctccgtccctcaatacttgacctatttgaaaaaaatatttgtcccacaatacttgacattctcaaatttctaagcagaatt 2970878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 33403195 - 33403280
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  ||||||||||| |||||||||||||| | |||||| | |||| |||||||||||| ||||  ||||||||||    
T  33403195 actccctccgtccctgaataagtgatctatttgtaaaaaaaaattgtcctaaaatacttgaccttctcaaattttaaagcaaaatt 33403280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 36768888 - 36768803
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||| |  |||| | |||||||| |||| | |||||| ||| ||||  ||||||||||    
T  36768888 actccctccgtccctgaataagtgacctatttttttaaaaaaattgtcccaaaatactcgaccttatcaaattttaaagcaaaatt 36768803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 40071748 - 40071663
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40071748 actccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatt 40071663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 54438456 - 54438371
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  54438456 actccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgatcttctcagatttctaagcaaaatt 54438371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 51744790 - 51744698
Alignment:
Q  158 aaataccactccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||| ||||||||||||  | |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  51744790 aaatactactccctccgtccctaaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaagcaaaatt 51744698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 37065050 - 37064967
Alignment:
Q  167 tccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37065050 tccctccgtccctgaataagtgacttatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatt 37064967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 17493754 - 17493839
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  17493754 actccctccgtccctgaataagtgacctatttgtaaaaaatatttgtctcacaatacttgatcttctcagatttctaagcaaaatt 17493839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 47199501 - 47199572
Alignment:
Q  179 tgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  47199501 tgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaggcaaaatt 47199572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 925435 - 925350
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||| |||||  ||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||    
T  925435 actcccaccgtccctgaataagtgacctatttgtaaaaaatatttatcctacaatacttgaccttctcagatttctaagcaaaatt 925350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 34408956 - 34408871
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| | ||||||    
T  34408956 actccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccataatacttgaccttctcagatttctaggtaaaatt 34408871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 39787993 - 39788079
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaa-aatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  39787993 actccctccgtctctaaataagtgacctatttgtaaaaaaatatttgttccacaatacttgaccttatcagatttctaagcaaaatt 39788079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 20789674 - 20789759
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||| |||||||  ||||||| ||| ||||||||||||||||||||||||| |||| |||| ||||||||||||||||| ||||||    
T  20789674 actctctccgtccctgaataaatgatctatttgtaaaaaatatttgtcccataatacttgatcttctcagatttctaagtaaaatt 20789759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 10441144 - 10441230
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgt-aaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||| |||||| |||||||||| |||| |||||||||||| ||||  ||||||||||    
T  10441144 actccctccgtccctgaataagtgacctatttgtaaaaaaaaatttgtcccaaaatacttgaccttctcaaattttaaagcaaaatt 10441230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 3172296 - 3172233
Alignment:
Q  187 tgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||| |||||||||||||||||||||| ||||| |||||| ||||||||||| ||||    
T  3172296 tgacctatttgaaaaaaatatttgtcccacaatacttgactttctcaaatttctaagcagaatt 3172233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 21240327 - 21240405
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaag 243  Q
    ||||||||||||  | ||||  ||||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||    
T  21240327 actccctccgtccctcaatacttgacctatttgaaaaaaatatttgtcccataatacttgaccttctcagacttctaag 21240405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 33801053 - 33800996
Alignment:
Q  193 atttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||||||||| | | |||| |||||||||||||||||||||| ||||||    
T  33801053 atttgtaaaaaatatttgttctataatacttgaccttctcagatttctaagtaaaatt 33800996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 46870630 - 46870686
Alignment:
Q  187 tgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaag 243  Q
    ||||||||||  |||||||||||||||||||||| ||||||| ||||||||| ||||    
T  46870630 tgacctatttagaaaaaatatttgtcccacaatacttgacctgctcagatttttaag 46870686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 53509907 - 53509863
Alignment:
Q  199 aaaaaatatttgtcccacaatatttgaccttctcagatttctaag 243  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||    
T  53509907 aaaaaatatttgttccacaatatttgaccttatcagatttctaag 53509863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 28690189 - 28690109
Alignment:
Q  169 cctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||  ||||||| |||| ||||||||||||| ||| ||| || ||||||||||||||||| ||||  ||||||||||    
T  28690189 cctccgtccctgaataactgacatatttgtaaaaaaaatt-gtcgcaaaatatttgaccttctcaaattttaaagcaaaatt 28690109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 41555485 - 41555542
Alignment:
Q  187 tgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagc 244  Q
    ||||||||||| |||||| ||||||||| ||||| |||||||||||| |||| |||||    
T  41555485 tgacctatttggaaaaaaaatttgtcccgcaataattgaccttctcaaatttttaagc 41555542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 32218212 - 32218151
Alignment:
Q  189 acctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||| ||||||||||||||| | |||| ||||  ||||||||||| |||||| ||||    
T  32218212 acctatttgaaaaaaatatttgtcctataatacttgattttctcagatttttaagcagaatt 32218151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 28910434 - 28910370
Alignment:
Q  187 tgacctatttgtaaaaaa-tatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||| |||||| ||||||| | ||| ||||| |||||||||||||| |||||| ||||    
T  28910434 tgacctatttgaaaaaaaatatttgttctacagtatttaaccttctcagatttttaagcagaatt 28910370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 40496774 - 40496859
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  40496774 actccctccgtccttgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaaacaaaatt 40496859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 41346048 - 41346133
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41346048 actccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatt 41346133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 48169725 - 48169810
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  48169725 actccctccgtctctgaataagtgacctatttgtaaaaaatatttgtcccataatacttgaccttctcagatttctaagcaaaatt 48169810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 54014238 - 54014323
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  54014238 actccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatt 54014323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 50676476 - 50676561
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  50676476 actccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttttaagcaaaatt 50676561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 51545663 - 51545748
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  51545663 actccctccgttcctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatt 51545748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 12568307 - 12568222
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  12568307 actccctccgtccctgaataagtgacatatttgtaaaaaatatttgtcccacaatacttgactttctcagatttctaagcaaaatt 12568222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 13544771 - 13544686
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  13544771 actccctccgtccctgaataagtgacatatttgtaaaaaatatttgtcccacaatacttgactttctcagatttctaagcaaaatt 13544686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 24709025 - 24709096
Alignment:
Q  179 tgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  24709025 tgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttataagcaaaatt 24709096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 30459807 - 30459892
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||| | |||||||  |||| |||||||||||| ||||  ||||||||||    
T  30459807 actccctccgtccctgaataagtgacctatttgtaaaaaaaaattgtccctaaatacttgaccttctcaaattttaaagcaaaatt 30459892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 45080717 - 45080632
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45080717 actccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatt 45080632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 2110221 - 2110306
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  2110221 actccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttatcagatttctaagcaaaatt 2110306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 43370675 - 43370760
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  43370675 actccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttcttagatttctaagcaaaatt 43370760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 4828388 - 4828303
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  | |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4828388 actccctccgtccctcaataagtgacatatttgtaaaaaatatttgtcccacaatatttgaccttctcaaatttctaagcaaaatt 4828303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 29193989 - 29194074
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||    
T  29193989 actccctccgtccctgaataagtgacctatttgtaaaaaaaatgtgtcccacaatacttgaccttctcagatttctaagcaaaatt 29194074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 250
Target Start/End: Complemental strand, 28585981 - 28585897
Alignment:
Q  166 ctccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||||  ||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||    
T  28585981 ctccctccgtccctgaataagtgacctatttgtaaaaaatatttatcccacaatacttaaccttctcagatttctaagcaaaatt 28585897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 8381591 - 8381538
Alignment:
Q  189 acctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaa 242  Q
    |||||||||||||||||||||||||||| ||| |||||||||||| ||||||||    
T  8381591 acctatttgtaaaaaatatttgtcccacgatacttgaccttctcaaatttctaa 8381538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 25898464 - 25898549
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||| | || ||||| |||| | |||||||||| ||||  ||||||||||    
T  25898464 actccctccgtccctgaataagtgacctatttgtaaaaaaaaattatcccaaaatactcgaccttctcaaattttaaagcaaaatt 25898549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 42847202 - 42847121
Alignment:
Q  169 cctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||| || ||||  ||||||||||| ||||||||||||||||| |||| |||||||| |||||||| |||||| ||||    
T  42847202 cctccgtcctttaatatttgacctatttgaaaaaaatatttgtcccataatacttgaccttttcagatttttaagcagaatt 42847121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 39646591 - 39646548
Alignment:
Q  199 aaaaaatatttgtcccacaatatttgaccttctcagatttctaa 242  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  39646591 aaaaaatatttgtcccacaatatttgacattctcagatttctaa 39646548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 31922122 - 31922053
Alignment:
Q  181 aataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||| ||||||||||||| | |||||||| |||| |||||||||||| ||||  ||||||||||    
T  31922122 aataagtgacatatttgtaaaaaaaaattgtcccaaaatacttgaccttctcaaattttaaagcaaaatt 31922053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 1779335 - 1779286
Alignment:
Q  201 aaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||||||||||||   ||| ||||||||||||||||||| ||||    
T  1779335 aaaatatttgtcccacaatgcctgatcttctcagatttctaagcagaatt 1779286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 29194295 - 29194255
Alignment:
Q  157 taaataccactccctccgtctttgaataagtgacctatttg 197  Q
    ||||||| ||||||||||||  |||||||||||||||||||    
T  29194295 taaatactactccctccgtccctgaataagtgacctatttg 29194255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 46370928 - 46371013
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46370928 actccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatt 46371013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 38321646 - 38321731
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38321646 actccctccgtccctgaataactgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatt 38321731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 46862548 - 46862642
Alignment:
Q  156 ataaataccactccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||  ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||    
T  46862548 ataaatattactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttcttagatttttaagcaaaatt 46862642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 1929515 - 1929430
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  | |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  1929515 actccctccgtccctaaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcatatttctaagcaaaatt 1929430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 28037000 - 28036915
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  | ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28037000 actccctccgtcccttaataaatgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatt 28036915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 32045834 - 32045919
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  ||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  32045834 actccctccgtccctgaataagtgatctatttgtaaaaaatatttgttccacaatacttgaccttctcagatttctaagcaaaatt 32045919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 39151196 - 39151111
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||| |||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  39151196 actctctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttcttagatttctaagcaaaatt 39151111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 8229064 - 8229149
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||| |||||||||||||| || ||||| || ||||||| |||||| |||||||||||    
T  8229064 actccctccgtccctgaataagtgacctatttataaaaaatatttgttcctcaatacttaaccttcttagatttttaagcaaaatt 8229149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 50777014 - 50777083
Alignment:
Q  181 aataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||| |||||||||||||||||||||||| |||| |||||||||| | ||||||||||||||||    
T  50777014 aataagtgacttatttgtaaaaaatatttgtcccataatacttgaccttcttaaatttctaagcaaaatt 50777083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 1207749 - 1207664
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||||| || ||||  ||||||||||| ||||||||||||||  | |||| |||||||||||||||||||||||| ||||    
T  1207749 actccctccgtccttcaatatttgacctatttgaaaaaaatatttgtcttataatacttgaccttctcagatttctaagcagaatt 1207664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 38817801 - 38817860
Alignment:
Q  191 ctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||| ||||||||||||||||| |||||||||| |||||| ||||||||||||||||    
T  38817801 ctatttgaaaaaaatatttgtcccataatatttgactttctcaaatttctaagcaaaatt 38817860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 40562711 - 40562648
Alignment:
Q  187 tgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||| |||||||||||||||||||||| ||||| |||||| |||| |||||| ||||    
T  40562711 tgacctatttgaaaaaaatatttgtcccacaatacttgacattctcatatttttaagcagaatt 40562648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 9129675 - 9129616
Alignment:
Q  191 ctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||| ||||||||||| || || ||||||| |||||||||||||| |||||| ||||    
T  9129675 ctatttgaaaaaaatatttatctcataatattttaccttctcagatttttaagcagaatt 9129616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 27820765 - 27820859
Alignment:
Q  156 ataaataccactccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||  |||||||| |||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27820765 ataaatagtactccctctgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatt 27820859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 38070194 - 38070109
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  38070194 actccctctgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaggcaaaatt 38070109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 11254501 - 11254586
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||| | ||||||||||||| |||||||| ||||||||||||||||||||    
T  11254501 actccctccgtccctgaataagtgacctatttgtaaaaaaaaattgtcccacaatacttgaccttatcagatttctaagcaaaatt 11254586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 17493531 - 17493612
Alignment:
Q  169 cctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||    
T  17493531 cctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgatcttctcagatttctaaacaaaatt 17493612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 18575029 - 18575114
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||| | ||||||||||||| | |||||||||||||||||||||||||||    
T  18575029 actccctccgtccctgaataagtgacctatttgtaaaaaaaaattgtcccacaatactcgaccttctcagatttctaagcaaaatt 18575114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 39906916 - 39906996
Alignment:
Q  169 cctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||  ||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  39906916 cctccgtccctgaataagtgatctatttataaaa-atatttgtcccacaatacttgaccttctcagatttctaagcaaaatt 39906996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 17336269 - 17336184
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||| | ||||  ||||||||||  ||||||||||||||||| |||| |||||||||| ||||||||||||| ||||    
T  17336269 actccctccgtctctcaatacttgacctattttgaaaaaatatttgtcccataatacttgaccttcttagatttctaagcagaatt 17336184  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 12738663 - 12738580
Alignment:
Q  167 tccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||| | ||||  ||| ||||||| ||||||||||||||||| |||| |||||||| ||||||||||||||| ||||    
T  12738663 tccctccgtctctcaatacttgatctatttggaaaaaatatttgtcccataatacttgaccttatcagatttctaagcagaatt 12738580  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 9753771 - 9753856
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  | ||||  ||||||||||  ||||||||||||||||| |||| |||||||||||| ||||||||||| ||||    
T  9753771 actccctccgtccctcaatacttgacctatttaaaaaaaatatttgtcccataatacttgaccttctcaaatttctaagcagaatt 9753856  T

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Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 13243818 - 13243760
Alignment:
Q  192 tatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||| ||||||||| |||| |||||||||||||||||||| ||||||||||| ||||    
T  13243818 tatttggaaaaaatatatgtctcacaatatttgaccttctcaaatttctaagcagaatt 13243760  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 11146771 - 11146844
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagattt 238  Q
    ||||| |||||| |||||||||||| |||||||||||||| | ||||  || |||| |||||||| ||| ||||    
T  11146771 actccttccgtccttgaataagtgatctatttgtaaaaaaaaattgtttcaaaatacttgaccttatcaaattt 11146844  T

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Target: scaffold0318 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 16358 - 16443
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  16358 actccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaagcaaaatt 16443  T

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Target: scaffold0047 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 69754 - 69839
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  69754 actccctccgtccctgaataagtgacatatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaagcaaaatt 69839  T

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Target: scaffold0519 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 10892 - 10807
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    ||||||||||||  |||||||||||||||||||||||||| | ||||||||||||| |||||||| ||||||||||||||||||||    
T  10892 actccctccgtccctgaataagtgacctatttgtaaaaaaaaattgtcccacaatacttgaccttatcagatttctaagcaaaatt 10807  T

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Target: scaffold0061 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 10316 - 10231
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||||   ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  10316 actccctccgttcctgaataagtgatctatttgtaaaaaatatttgtcccacaatacttgaccttctcatatttctaagcaaaatt 10231  T

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Target: scaffold0532 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 3834 - 3900
Alignment:
Q  184 aagtgacctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagcaaaatt 250  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  3834 aagtgacctatttgtaaaaaatatttgtcccataatacttgaccttctcagatttctaagcaaaatt 3900  T

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Target: scaffold1194 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 1004 - 1060
Alignment:
Q  189 acctatttgtaaaaaatatttgtcccacaatatttgaccttctcagatttctaagca 245  Q
    ||||||||| |||||||||||||||||||||| |||| |||||||||||| ||||||    
T  1004 acctatttggaaaaaatatttgtcccacaatacttgagcttctcagatttttaagca 1060  T

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Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 92419 - 92374
Alignment:
Q  165 actccctccgtctttgaataagtgacctatttgtaaaaaatatttg 210  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  92419 actccctccgtctctgaataagtgatctatttgtaaaaaatatttg 92374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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