View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10274_low_29 (Length: 249)
Name: NF10274_low_29
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 40722266 - 40722031
Alignment:
| Q |
4 |
tatgtggagaaaactgcataagtcaacaataccaccatctctctcgtttatgacacacggttaccaaacgtaaacaccctcttcttcttttgttctctag |
103 |
Q |
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| T |
40722266 |
tatgtggagaaaactgcataagtcaacaataccaccatctctctcgtttatgacacacggttaccaaacgtaaacaccctcttcttcttttgttctctag |
40722167 |
T |
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| Q |
104 |
ccgtctttttcccatgcttttctatagctcttaccaccataaacatggttatgttcttgcaagatccatcacaaaatagaggtagttttagattctatat |
203 |
Q |
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| T |
40722166 |
ctgtctttttcccatgcttttctatagctcttaccaccataaacatggttatgttcttgcaagatccatcacaaaatagaggtagttttagattttatat |
40722067 |
T |
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| Q |
204 |
tgatttccttccaattctcaaaattaaagacctttg |
239 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
40722066 |
tgatttccttccaattctcaaaattaaagacctttg |
40722031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 16003919 - 16003687
Alignment:
| Q |
4 |
tatgtggagaaaactgcataagtcaacaataccaccatctctctcgtttatgacacacggttaccaaacgtaaacaccctcttcttcttttgttctctag |
103 |
Q |
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| T |
16003919 |
tatgtggagaaaattacataagtcaacaatacca---tctctctcatttatgacacacggttaccaaacgtaaacaccctcttcttcttttattctctag |
16003823 |
T |
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| Q |
104 |
ccgtctttttcccatgcttttctatagctcttaccaccataaacatggttatgttcttgcaagatccatcacaaaatagaggtagttttagattctatat |
203 |
Q |
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| T |
16003822 |
ctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattttatat |
16003723 |
T |
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| Q |
204 |
tgatttccttccaattctcaaaattaaagacctttg |
239 |
Q |
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| T |
16003722 |
tgatttcctttcaattctcaaaattaaagacctttg |
16003687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 26795302 - 26795067
Alignment:
| Q |
4 |
tatgtggagaaaactgcataagtcaacaataccaccatctctctcgtttatgacacacggttaccaaacgtaaacaccctcttcttctt---ttgttctc |
100 |
Q |
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| T |
26795302 |
tatgtggagaaaatttcataagtcaacaatacca---tctctctcatttatgacacacggttaccaaacgtaaacaccctcttcttcttcttttgttctc |
26795206 |
T |
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| Q |
101 |
tagccgtctttttcccatgcttttctatagctcttaccaccataaacatggttatgttcttgcaagatccatcacaaaatagaggtagttttagattcta |
200 |
Q |
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|||| |||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26795205 |
tagctgtctttttcccatgcttttctacagctgttaccaccataaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattcta |
26795106 |
T |
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| Q |
201 |
tattgatttccttccaattctcaaaattaaagacctttg |
239 |
Q |
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| T |
26795105 |
tattgatttccttccaattctcaaaattaaagacctttg |
26795067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 50 - 239
Target Start/End: Original strand, 27221862 - 27222051
Alignment:
| Q |
50 |
tttatgacacacggttaccaaacgtaaacaccctcttcttcttttgttctctagccgtctttttcccatgcttttctatagctcttaccaccataaacat |
149 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| || |
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| T |
27221862 |
tttatgacacacggttaccaaacgtaaacaacctcttcttcttttgttctctagctgtctttttcccatgcttttctgcagctcttaccaccataaatat |
27221961 |
T |
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| Q |
150 |
ggttatgttcttgcaagatccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaattaaagacctttg |
239 |
Q |
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| T |
27221962 |
ggttctgttcttgcaagatccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaattaaagacctttg |
27222051 |
T |
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