View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10274_low_31 (Length: 247)
Name: NF10274_low_31
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 24438379 - 24438595
Alignment:
| Q |
13 |
cagaacctgtgaatatgggggaaaaataaacattagaacacatataaaataaaaaacacaagtaataattacgttttccaaatcatagcacaatacgttt |
112 |
Q |
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| T |
24438379 |
cagaatctgtgaatatgggggaaaaataaacattaggacacatataaaataaaaaacacaagtaataattaggttttccaaatcatagcacaatacgttt |
24438478 |
T |
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| Q |
113 |
cgtctacatagaaagctacctcaagttgctctttagtgaataactctttctgaacattccatgtgtcagcatgggtccgccggaattcggcaacagcttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24438479 |
cgtctacatagaaagctacctcaagttgctctttagtgaataactctttctgaacattccatgtgtcagcatgggtccgccggaattctgcaacagcttt |
24438578 |
T |
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| Q |
213 |
tgtaacagtagatttca |
229 |
Q |
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||||||||||||||||| |
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| T |
24438579 |
tgtaacagtagatttca |
24438595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 24463609 - 24463824
Alignment:
| Q |
13 |
cagaacctgtgaatatgggggaaaaataaacattagaacacatataaaataaaaaacacaagtaataattacgttttccaaatcatagcacaatacgttt |
112 |
Q |
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||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24463609 |
cagaatctgtgaatatgggggagaaataaacattaggacacatataaaataaaaaacacaagtaataattacgttttccaaatcatagcacaatatgttt |
24463708 |
T |
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| Q |
113 |
cgtctacatagaaagctacctcaagttgctctttagtgaataactctttctgaacattccatgtgtcagcatgggtccgccggaattcggcaacagcttt |
212 |
Q |
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|||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24463709 |
cgtctacata-aaagctacctcaagctgctcttcagtgaataactctttctgaacattccatgtgtcagcatgggtccgccggaattctgcaacagcttt |
24463807 |
T |
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| Q |
213 |
tgtaacagtagatttca |
229 |
Q |
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||||||||| ||||||| |
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| T |
24463808 |
tgtaacagtggatttca |
24463824 |
T |
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