View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10274_low_32 (Length: 242)

Name: NF10274_low_32
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10274_low_32
NF10274_low_32
[»] chr4 (2 HSPs)
chr4 (167-240)||(1797034-1797110)
chr4 (1-51)||(1796863-1796913)
[»] chr1 (1 HSPs)
chr1 (173-242)||(3528916-3528985)


Alignment Details
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 1797034 - 1797110
Alignment:
Q  167 ttaagactcagttatagaccatgccatgtcttcaagactttcaagtat---aaaaatacaaatcttgtctccctttg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||    
T  1797034 ttaagactcagttatagaccatgccatgtcttcaagactttcaagtataaaaaaaatacaaatcttgtctctctttg 1797110  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 1796863 - 1796913
Alignment:
Q  1 taaaaatattgaagatttaaaggtgcacgttggtctttgtagttaaacttc 51  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  1796863 taaaaatattgaagatttaaaggtgcacggtggtctttgtagttgaacttc 1796913  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 3528985 - 3528916
Alignment:
Q  173 ctcagttatagaccatgccatgtcttcaagactttcaagtataaaaatacaaatcttgtctccctttgct 242  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||    
T  3528985 ctcagttatagaccatgccatgtcttcaaagctttcaagtataaaaatacaaatcttgcctctctttgct 3528916  T

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