View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10274_low_39 (Length: 218)
Name: NF10274_low_39
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 36672866 - 36672658
Alignment:
| Q |
1 |
cggcagtcgtaagaactgttaaggttatgttaccaatttttctcttttctttgaagtctttacctatttctaatacctaccatagcgaaaacatttttga |
100 |
Q |
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| T |
36672866 |
cggcagtcgtaagaactgttaaggttatgttaccaatttttctcttttctttgaagtctttacctatttctaatacctaccatagcgaaaacatttttga |
36672767 |
T |
|
| Q |
101 |
aagctcgattaatatgtttttaaaagtcaaagttacttgattctgcaaaatgcacctaaagaatcaattacatggccatcaagacatgctaataacttag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36672766 |
aagctcgattaatatgtttttaaaagtcaaagttacttgattctgcaaaatgcacctaaagaatcaattacatggccatcaagacatgctaattacttat |
36672667 |
T |
|
| Q |
201 |
ttcatctca |
209 |
Q |
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||||||||| |
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| T |
36672666 |
ttcatctca |
36672658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 36683224 - 36683155
Alignment:
| Q |
94 |
tttttgaaagctcgattaatatgtttttaaaagtcaaagttacttgattctgcaaaatgcacctaaagaa |
163 |
Q |
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||||| |||||||| ||||||| ||||| ||||||| |||||||| || |||||||||||||||||||| |
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| T |
36683224 |
tttttcaaagctcgtttaatatatttttgaaagtcagagttacttacttttgcaaaatgcacctaaagaa |
36683155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 56462414 - 56462376
Alignment:
| Q |
100 |
aaagctcgattaatatgtttttaaaagtcaaagttactt |
138 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |
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| T |
56462414 |
aaagctcgattaatatatttttaaaagtcaaagttactt |
56462376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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