View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10274_low_40 (Length: 213)
Name: NF10274_low_40
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 28560032 - 28560219
Alignment:
| Q |
12 |
gagatgaagacatttgggatttcattgaagatggcacaactgttgttgtgaacaaagatggtaaagctgtaaacaagaagtgtttgactactgatgaaaa |
111 |
Q |
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| T |
28560032 |
gagatgaagacatttgggatttcattgaagatggcacaactgatgttgtgaacaaagatggtaaagcaataaacaagaagtgtttgactacggatgaaaa |
28560131 |
T |
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| Q |
112 |
gaaggaatacaaaaagcatcacaaagcgagaaacatttaggtgaatgttttggaattcaaggaattcaacaagattgttgataaatct |
199 |
Q |
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| T |
28560132 |
gaaggaatacaaaaagcatcacaaagcgagaaacatttaggtgaatgttttggaattcaaggaattcaacaagattgttgataaatct |
28560219 |
T |
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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 30342923 - 30343105
Alignment:
| Q |
13 |
agatgaagacatttgggatttcattgaagatggcacaactgttgttgtgaacaaagatggtaaagctgtaaacaagaagtgtttgactactgatgaaaag |
112 |
Q |
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|||||||||||||||||| ||||| | ||| | | || |||| ||||| |||||||||||||| ||| | | ||| |||||| | | |||||||| |
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| T |
30342923 |
agatgaagacatttgggacgtcatttaggatagaaaaaatgtttttgtgggtaaagatggtaaagcagtacagaggaaaggtttgattgataatgaaaag |
30343022 |
T |
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| Q |
113 |
aaggaatacaaaaagcatcacaaagcgagaaacatttaggtgaatgttttggaattcaaggaattcaacaagattgttgataa |
195 |
Q |
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|| |||||||||||||||||||||| | ||||| || |||||||| ||| ||||||||||||| ||||||||| |||||| |
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| T |
30343023 |
aaagaatacaaaaagcatcacaaagtcataaacaatttggtgaatgctttataattcaaggaattagacaagattgctgataa |
30343105 |
T |
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