View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10274_low_7 (Length: 426)
Name: NF10274_low_7
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_low_7 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 11747973 - 11748389
Alignment:
| Q |
1 |
gtgtaggcagtggagaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagcctcgagaactatttacagaaagccacaaggagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11747973 |
gtgtaggcagtggagaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagcctcgagaactatttacagaaagccacaaggagc |
11748072 |
T |
|
| Q |
101 |
tggtgaaagctggagagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11748073 |
tggtgaaagctggagagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgt |
11748172 |
T |
|
| Q |
201 |
ccctggtggaaacaatcaagacagtggaattcccctcttcttgcatgacaatacatttaatgtgtttataatagcagatgcaatatctcttttcacttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11748173 |
ccctggtggaaacaatcaagacagtggaattcccctcttcttgcatgacaatacatttaatgtgtttataatagcagatgcaatatctcttttcacttct |
11748272 |
T |
|
| Q |
301 |
tcaacttcagtccttctcttcattggaattctcacagcgcgttatgccgaaaaggatttcctcaagtcattaccactcaggttgcttttcggcctcattg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11748273 |
tcaacttcagtccttctcttcattggaattctcacagcgcgttatgctgaaaaggatttcctcaagtcattaccactcaggttgcttttcggcctcattg |
11748372 |
T |
|
| Q |
401 |
cactgttcttctctgtg |
417 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11748373 |
cactgttcttctctgtg |
11748389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 11882593 - 11882177
Alignment:
| Q |
1 |
gtgtaggcagtggagaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagcctcgagaactatttacagaaagccacaaggagc |
100 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||||||||||||||| || |||||||||||| |||||||||||| |
|
|
| T |
11882593 |
gtgtaggcagtggaggaaattgtgcaccccaagtgtaaggaagcaaaaaatgctgacgataagaagcctcgtgagctatttacagaaggccacaaggagc |
11882494 |
T |
|
| Q |
101 |
tggtgaaagctggagagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgt |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11882493 |
tggtgaaagccggagagaaatgggcaaaagatacagctggttcatttactcttgttgctacactcatcacaaccatcatgtttgctgcagctttcactgt |
11882394 |
T |
|
| Q |
201 |
ccctggtggaaacaatcaagacagtggaattcccctcttcttgcatgacaatacatttaatgtgtttataatagcagatgcaatatctcttttcacttct |
300 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| | |||||||| |||| |||||| ||| |||||| |||||||||||| |||||||||||||||| |
|
|
| T |
11882393 |
ccctggtggaaacaatcaagacaatggagttcccttgttcttgcacgacatcacatttgatgcgtttattatagcagatgcagcatctcttttcacttct |
11882294 |
T |
|
| Q |
301 |
tcaacttcagtccttctcttcattggaattctcacagcgcgttatgccgaaaaggatttcctcaagtcattaccactcaggttgcttttcggcctcattg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| || || || ||||| || ||||| || |||||||||||||| ||||| ||||| ||||||| |||||| |
|
|
| T |
11882293 |
tcaacttcagtccttctcttcattggaatcctaacggctcgttacgctgaaaaagacttcctcaagtcattgccactaaggttacttttcgcactcatta |
11882194 |
T |
|
| Q |
401 |
cactgttcttctctgtg |
417 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
11882193 |
tgcttttcttctctgtg |
11882177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 396
Target Start/End: Complemental strand, 11790756 - 11790369
Alignment:
| Q |
9 |
agtggagaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagcctcgagaactatttacagaaagccacaaggagctggtgaaa |
108 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||| || ||||||||||||||||||||||||| |||||| |
|
|
| T |
11790756 |
agtggagaaaattgtgcaccccaaatgtaaggaagccaaaaattcagaagataagaagcctcatgagatatttacagaaagccacaaggagctagtgaaa |
11790657 |
T |
|
| Q |
109 |
gctggagagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtg |
208 |
Q |
| |
|
|| || || |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11790656 |
gccggtgaaaaatgggcaaaagaaacagcaggttcatttacacttgttgctactctcatcacaaccatcatgtttgctgcagctttcactgtccctggtg |
11790557 |
T |
|
| Q |
209 |
gaaacaatcaagacagtggaattcccctcttcttgcatgacaatacatttaatgtgtttataatagcagatgcaatatctcttttcacttcttcaacttc |
308 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11790556 |
gaaacaatcaagacagtggaattcccttgttcttacatgactacacatttaatgtgtttataatagcagatgcaatatctcttttcacttcttcaacttc |
11790457 |
T |
|
| Q |
309 |
agtccttctcttcattggaattctcacagcgcgttatgccgaaaaggatttcctcaagtcattaccactcaggttgcttttcggcctc |
396 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||||| || ||||||||| | ||||| || ||||| | ||| || ||||||||| |
|
|
| T |
11790456 |
agtccttctcttcattggaatccttacggcgcgttatgcagagaaggatttcttaaagtctttgccacttaagttactcttcggcctc |
11790369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 368
Target Start/End: Complemental strand, 11834973 - 11834614
Alignment:
| Q |
9 |
agtggagaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagcctcgagaactatttacagaaagccacaaggagctggtgaaa |
108 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| ||||| ||| ||||||||||| || || ||||||||||||| ||||||||||| |||||| |
|
|
| T |
11834973 |
agtggagaaaatcgtgcaccccaagtgtaaggaagccaaaaacgtagaagataagaagccccgtgagatatttacagaaagtcacaaggagctagtgaaa |
11834874 |
T |
|
| Q |
109 |
gctggagagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtg |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11834873 |
gctggagaaaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgtttgctgcagctttcactgtccctggtg |
11834774 |
T |
|
| Q |
209 |
gaaacaatcaagacagtggaattcccctcttcttgcatgacaatacatttaatgtgtttataatagcagatgcaatatctcttttcacttcttcaacttc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11834773 |
gaaacaatcaagacagtggaattcccctcttcttgaaggacaaaacatttaatgtttttataatagcagatgcaatatctcttttcacttcctcaacttc |
11834674 |
T |
|
| Q |
309 |
agtccttctcttcattggaattctcacagcgcgttatgccgaaaaggatttcctcaagtc |
368 |
Q |
| |
|
| |||| ||||||||||||||||| || || |||||||| |||||||||||||| ||||| |
|
|
| T |
11834673 |
aatcctcctcttcattggaattctaacggcacgttatgcagaaaaggatttcctaaagtc |
11834614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 120 - 368
Target Start/End: Complemental strand, 11754504 - 11754256
Alignment:
| Q |
120 |
atgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtggaaacaatcaa |
219 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11754504 |
atgggcaaaagagacagcagaatcatttacacttgtggctacacttatcacaaccatcatgtttgctgcagctttcactgtccctggtggaaacaatcaa |
11754405 |
T |
|
| Q |
220 |
gacagtggaattcccctcttcttgcatgacaatacatttaatgtgtttataatagcagatgcaatatctcttttcacttcttcaacttcagtccttctct |
319 |
Q |
| |
|
||||||||||||||||||||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11754404 |
gacagtggaattcccctcttcttaaaggacaaaatgtttaatgtgtttataatagcagatgcaatatctcttttcacttcatcaacttcagtccttctct |
11754305 |
T |
|
| Q |
320 |
tcattggaattctcacagcgcgttatgccgaaaaggatttcctcaagtc |
368 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
11754304 |
tcattggaattctcacagcgcgttttgcagaaaaggatttcctaaagtc |
11754256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 10 - 368
Target Start/End: Complemental strand, 11751503 - 11751156
Alignment:
| Q |
10 |
gtggagaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagcctcgagaactatttacagaaagccacaaggagctggtgaaag |
109 |
Q |
| |
|
||||||||||||||||| || ||| |||||||||| ||||| ||| || || |||||||| || ||||||| |||||||||| |||||| | ||||| |
|
|
| T |
11751503 |
gtggagaaaattgtgcaccctaagcgtaaggaagccaaaaacgtagaagagaaaaagcctcgtgagatatttaccgaaagccacagggagctagcgaaag |
11751404 |
T |
|
| Q |
110 |
ctggag-agaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtg |
208 |
Q |
| |
|
| || | | |||||||||||||| |||||||||| |||| || |||||||| || |||||||| |||||||||||||| |||||||||| |
|
|
| T |
11751403 |
cagggggaaaaatgggcaaaaga------------atttacacttattgcaactctcatcactactatcatgtttgctgcagctttcacagtccctggtg |
11751316 |
T |
|
| Q |
209 |
gaaacaatcaagacagtggaattcccctcttcttgcatgacaatacatttaatgtgtttataatagcagatgcaatatctcttttcacttcttcaacttc |
308 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||| | ||| | |||||||||||| || |||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
11751315 |
gaaaaaatcaagacagtggaattcctatcttcttgcaaggcaaaatatttaatgtgttcatcatagcagatgcaatttctcttttcacttctgcaacttc |
11751216 |
T |
|
| Q |
309 |
agtccttctcttcattggaattctcacagcgcgttatgccgaaaaggatttcctcaagtc |
368 |
Q |
| |
|
|||| |||||||||||||||||||||||| | ||| ||||||||| |||||||| ||||| |
|
|
| T |
11751215 |
agtcattctcttcattggaattctcacagggagttttgccgaaaatgatttcctaaagtc |
11751156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 85 - 212
Target Start/End: Complemental strand, 12008795 - 12008668
Alignment:
| Q |
85 |
gaaagccacaaggagctggtgaaagctggagagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcg |
184 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||||||||||||||| ||||| || | |||| |||| | ||||||||||| ||||||||||| | |
|
|
| T |
12008795 |
gaaagccacgaggagctagtgaaagaaggagagaaatgggcaaaagacacagcaacatcttatacaattgtgggaacactcatcactaccatcatgtttg |
12008696 |
T |
|
| Q |
185 |
ctgcagctttcactgtccctggtggaaa |
212 |
Q |
| |
|
||||||| || || ||||| |||||||| |
|
|
| T |
12008695 |
ctgcagcctttacggtcccaggtggaaa |
12008668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 12090959 - 12090906
Alignment:
| Q |
85 |
gaaagccacaaggagctggtgaaagctggagagaaatgggcaaaagatacagct |
138 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
12090959 |
gaaagccatgaggagctagtgaaagctggagaaaaatggacaaaagacacagct |
12090906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 218
Target Start/End: Original strand, 6106081 - 6106180
Alignment:
| Q |
119 |
aatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtggaaacaatca |
218 |
Q |
| |
|
||||||||||||||| ||| |||| || ||| |||| | ||| ||||||| ||||||||||| ||||||||||||||||| || || ||||||||||| |
|
|
| T |
6106081 |
aatgggcaaaagatatagcaagttctttcacaattgtgggtactctcatcattaccatcatgtttgctgcagctttcactgttccaggaggaaacaatca |
6106180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 6129822 - 6129722
Alignment:
| Q |
119 |
aatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtggaaacaatca |
218 |
Q |
| |
|
||||||||||||||||||| |||| || ||| |||||| ||| || |||| ||||||||||| || || ||||||||||| || || ||||||||||| |
|
|
| T |
6129822 |
aatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggaggaaacaatca |
6129723 |
T |
|
| Q |
219 |
a |
219 |
Q |
| |
|
| |
|
|
| T |
6129722 |
a |
6129722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 6858690 - 6858641
Alignment:
| Q |
172 |
accatcatgttcgctgcagctttcactgtccctggtggaaacaatcaaga |
221 |
Q |
| |
|
||||||||||| ||||||||||||||||| || || |||||||||||||| |
|
|
| T |
6858690 |
accatcatgtttgctgcagctttcactgttccaggaggaaacaatcaaga |
6858641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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