View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10274_low_9 (Length: 388)
Name: NF10274_low_9
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 40256737 - 40256365
Alignment:
| Q |
1 |
agcataggtaataataattcaagtttttaaaccttnnnnnnnntcaagttttatatttggaggagtatttgtacttcaagatggatggtaggttgactaa |
100 |
Q |
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| T |
40256737 |
agcatgggtaataataattcaagtttttaaaccttaaaaaaaatcaagttttatatttggaggagtatttgtacttcaagatggatggtaggttgactaa |
40256638 |
T |
|
| Q |
101 |
tgtgtggcatgatgtatggactaacacaccttactcacgtaagttgaatctatatatgcttgtgcttaatattcgtacgattgtgtgagatttatggcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
40256637 |
tgtgtggcatgatgtatggactaacacaccttactcacgtaagttgaatctatgtatgcttgtgcttaatattcgtagg-ttgtgtgagatttatggcag |
40256539 |
T |
|
| Q |
201 |
caacatagtaaatattgtgatgttgatcttgttggtggttggtttatttaggagaatgttgaagaggttttgaatactcattttctttcgtttattacgg |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40256538 |
caacatagtaaatattgtgatgttgatcttgtttgtggttggtttatttaggagaatgttgaagaggttttgaatactcatcttctttcgtttattacgg |
40256439 |
T |
|
| Q |
301 |
aggatacactaacacaatgacaaaattcacaaagaaaatttacagataaatctatttataagctagttgtaaat |
374 |
Q |
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||||||||||||||||||||||| |||||||| |||| ||||||| |||||||||||||||||||||||||||| |
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| T |
40256438 |
aggatacactaacacaatgacaagattcacaaggaaagtttacagttaaatctatttataagctagttgtaaat |
40256365 |
T |
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