View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10275_high_3 (Length: 294)
Name: NF10275_high_3
Description: NF10275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10275_high_3 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 45363549 - 45363271
Alignment:
| Q |
18 |
agacaaatgggacaattccttgtggaagtgctgcctgtattatannnnnnnacaataagatttcaaacacaaacttagtcgaagttgtattggttgtgtt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45363549 |
agacaaatgggacaattccttgtggaagtgctgcctgtattattattttttaaaataagatttcaaacacaaacttagtcgaagttgtattggttgtgtt |
45363450 |
T |
|
| Q |
118 |
gaaatcaaagtaa--gtacctgaacaatggcaacgtgcaagagggttcctctgagtccaacaacaatggaagcagctgccatgacagctggaccggtaag |
215 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45363449 |
gaaatcaaagtaaaagtacctgaacaatggcaacgttcaagagggttcctctgagtccaacaacaatggaagcagctgccatgacagctggaccggtaag |
45363350 |
T |
|
| Q |
216 |
gaatctaatggccatagagaaagctgctatgcgattacctcatgctataatcctcggttgcaaagccatgaacagacct |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45363349 |
gaatctaatggccatagagaaagctgctatgcgattaccacatgctataatcctcggttgcaaagccatgaacagacct |
45363271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 294
Target Start/End: Complemental strand, 25042135 - 25041974
Alignment:
| Q |
133 |
acctgaacaatggcaacgtgcaagagggttcctctgagtccaacaacaatggaagcagctgccatgacagctggaccggtaaggaatctaatggccatag |
232 |
Q |
| |
|
||||||||||||||||| || ||||| ||| ||||||||||| ||| |||||||||||||||||||||||||| ||||||||| | |||| | |
|
|
| T |
25042135 |
acctgaacaatggcaacatgaaagagaacacctttgagtccaacagcaaatgaagcagctgccatgacagctggaccaacaaggaatctcacacccattg |
25042036 |
T |
|
| Q |
233 |
agaaagctgctatgcgattacctcatgctataatcctcggttgcaaagccatgaacagacct |
294 |
Q |
| |
|
| |||||||| ||| ||| || |||||||| || | ||||||||||||||||||| |||| |
|
|
| T |
25042035 |
aaaaagctgcaatggaatttccacatgctatgatttttggttgcaaagccatgaacaaacct |
25041974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 25043239 - 25043202
Alignment:
| Q |
18 |
agacaaatgggacaattccttgtggaagtgctgcctgt |
55 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25043239 |
agacaaatgggacaattccttgtggaagagctgcctgt |
25043202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University