View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10275_low_1 (Length: 535)
Name: NF10275_low_1
Description: NF10275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10275_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 25304092 - 25303651
Alignment:
| Q |
1 |
atcgtttgaatacaaatcatttagaagaatatacggagaagtgtgctcggcttgttattcaggaggaggccttttggaaacaaagagctaagatgcactg |
100 |
Q |
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| T |
25304092 |
atcgtgtgaatacaaatcatttagaagaaaatatggagaagtgtgctcggcttgttattcaggaggaggccttttggaaacaaagagctaagatgcactg |
25303993 |
T |
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| Q |
101 |
gttgaaacaaagggacgtgaatacaaggttcttttacatgtccactgtttcgagaggtaaagtcaagaaagttataaaactggtgtctgataatggttat |
200 |
Q |
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| T |
25303992 |
gttgaaacaaagggacgtgaatagaaggttcttttacatgtccactgtttctagaggtaaagtcaagaaagttacaaaactggtgtttgataatggttat |
25303893 |
T |
|
| Q |
201 |
ttggttatgagataggagcacctatgtgatgtagcaaagaattattttgatgtggtttttgcggccaacaatggtaaccatacgcatgttcttgattttc |
300 |
Q |
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| T |
25303892 |
ttggttatgagataggagcacctatgtgatgtagcaaataattattttgatgtggtttttgcagccaacaatggtaaccatacgcatgttcttgattttc |
25303793 |
T |
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| Q |
301 |
taaagtgtgtgggttacccacgaatacaatgatatgcttatgacactgattactagaaaagagcgcaaacatgccctatttcaaatgcaacctgataagt |
400 |
Q |
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| T |
25303792 |
taaagtgtgtgggttacccacgaatacaatgatatgcttatgacactgattactagaaaagagctcaaacatgccctatttcaaatgcaacctgataagt |
25303693 |
T |
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| Q |
401 |
ccccaaggtctgatggatttaatcttgtgttctatcattatt |
442 |
Q |
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| T |
25303692 |
cctcgaggtctgatggatttaatcctgcgttctatcattatt |
25303651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 441 - 512
Target Start/End: Complemental strand, 25302624 - 25302553
Alignment:
| Q |
441 |
ttcctatattattagtatatatgtcctccataattccatggttcatgatataaaacggatgattaatacata |
512 |
Q |
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| T |
25302624 |
ttcctatattatgagtatatatgacctccataattccattggtcatgatataaaacagatgattaacacata |
25302553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 7124477 - 7124523
Alignment:
| Q |
60 |
caggaggaggccttttggaaacaaagagctaagatgcactggttgaa |
106 |
Q |
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| T |
7124477 |
caggaggaggcgttttggaagcaaagagcaaaaatgcactggttgaa |
7124523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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