View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10275_low_11 (Length: 246)
Name: NF10275_low_11
Description: NF10275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10275_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 28785736 - 28785505
Alignment:
| Q |
1 |
atgtgtccctgcagttatccatagagacctaaaaagcagcaatattcttcttgacaaggacatgagagccaaggtttcagattttggactttcgaaactc |
100 |
Q |
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| T |
28785736 |
atgtgtccctgcagttatccatagagacctaaaaagcagcaatattcttcttgacaaggacatgagagccaaggtttcagattttggactttcgaaactc |
28785637 |
T |
|
| Q |
101 |
gctgttgatggagcctcccatgtttctagcgtagttcggggtacagtaggatatctggatcccgagtaaggccttaaactatttttccccattattttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28785636 |
gctgttgatggagcctcccatgtttctagcgtagttcggggtacagtaggatatctggatcccgagtaaggccttaaactatttttccccattattttgc |
28785537 |
T |
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| Q |
201 |
ttgtttccttaagttgattacataaccaaagt |
232 |
Q |
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| T |
28785536 |
ttgtttccttaagttgattacataaccaaagt |
28785505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 172
Target Start/End: Complemental strand, 22128898 - 22128728
Alignment:
| Q |
2 |
tgtgtccctgcagttatccatagagacctaaaaagcagcaatattcttcttgacaaggacatgagagccaaggtttcagattttggactttcgaaactcg |
101 |
Q |
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| T |
22128898 |
tgtgttcctgtagttatccatagagacttgaaaaccagcaatattcttcttgacagacagatgagagccaaggtttcagatttcggtctttccaaacttg |
22128799 |
T |
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| Q |
102 |
ctgttgatggagcctcccatgtttctagcgtagttcggggtacagtaggatatctggatcccgagtaaggc |
172 |
Q |
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| T |
22128798 |
ctgttgatggagtctcccatgtttcaagcatagttcgtgggacagtaggataccttgatcctgagtaaggc |
22128728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 40534023 - 40534193
Alignment:
| Q |
2 |
tgtgtccctgcagttatccatagagacctaaaaagcagcaatattcttcttgacaaggacatgagagccaaggtttcagattttggactttcgaaactcg |
101 |
Q |
| |
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||||| |||| |||||||||||||||| | |||| |||||||||||||||||||| | ||||||||||||||||||||||| || ||||| ||||| | |
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| T |
40534023 |
tgtgttcctgtagttatccatagagacttgaaaaccagcaatattcttcttgacagacagatgagagccaaggtttcagatttcggtctttccaaacttg |
40534122 |
T |
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| Q |
102 |
ctgttgatggagcctcccatgtttctagcgtagttcggggtacagtaggatatctggatcccgagtaaggc |
172 |
Q |
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|||||||||||| |||||||||||| ||| ||||||| || ||||||||||| || ||||| ||||||||| |
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| T |
40534123 |
ctgttgatggagtctcccatgtttcaagcatagttcgtgggacagtaggataccttgatcctgagtaaggc |
40534193 |
T |
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