View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10275_low_12 (Length: 241)
Name: NF10275_low_12
Description: NF10275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10275_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 8927188 - 8926963
Alignment:
| Q |
1 |
ctttttaatataaaggattgcgacgcgatggttaatgtgatttaaaaccttatgaacatgtatacattaaattgttacctcaagttggtcaccaaggttg |
100 |
Q |
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| T |
8927188 |
ctttttaatataaaggattgcgacgcgatggttaatgtgatttaaaatcttatgaacatgtatacattaaattgttacctcaagttggtcaccaaggttg |
8927089 |
T |
|
| Q |
101 |
atgacaatagagtgaggcattggagggacatcaatccattggtcatctttgagaagctgaagtccactgactttgtcatcttggaagagaaggatgatgc |
200 |
Q |
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| T |
8927088 |
atgacaatagagtgaggcattggagggacatcaatccattggtcatctttgagaagctgaagtccactgactttgtcatcttggaagagaaggatgatgc |
8926989 |
T |
|
| Q |
201 |
caccagcatctgtgtgcgctctaagt |
226 |
Q |
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|||||||||||||||| ||||||||| |
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| T |
8926988 |
caccagcatctgtgtgtgctctaagt |
8926963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 37629658 - 37629517
Alignment:
| Q |
75 |
ttacctcaagttggtcaccaaggttgatgacaatagagtgaggcattggagggacatcaatccattggtcatctttgagaagctgaagtccactgacttt |
174 |
Q |
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| T |
37629658 |
ttacctcaagttggtcaccaaggttgatgacaatggaatgatgcatgggagggacatctacccagttaccatctttgagaagctgaaggccactgacctt |
37629559 |
T |
|
| Q |
175 |
gtcatcttggaagagaaggatgatgccaccagcatctgtgtg |
216 |
Q |
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| T |
37629558 |
gtcatcttggaaaagaaggatgattccaccggcatcggtgtg |
37629517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 55528202 - 55528056
Alignment:
| Q |
76 |
tacctcaagttggtcaccaaggttgatgacaatagagtgaggcattggagggacatcaatccattggtcatctttgagaagctgaagtccactgactttg |
175 |
Q |
| |
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|||||||| |||||||||||||||||| ||||| || || ||||||| |||||||||||||||||| ||||||| || ||||||||||| | || ||| |
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| T |
55528202 |
tacctcaatttggtcaccaaggttgataacaatggaatggcgcattggtgggacatcaatccattggccatctttaaggagctgaagtccgccaaccttg |
55528103 |
T |
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| Q |
176 |
tcatcttggaagagaaggatgatgccaccagcatctgtgtgcgctct |
222 |
Q |
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| T |
55528102 |
tcatcttggaagagtaaaattatgccaccagcatctgtatgggctct |
55528056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 36871889 - 36872030
Alignment:
| Q |
75 |
ttacctcaagttggtcaccaaggttgatgacaatagagtgaggcattggagggacatcaatccattggtcatctttgagaagctgaagtccactgacttt |
174 |
Q |
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|
||||||||||||||||||||||||||| || || ||||| ||||||| || ||||||| ||| ||| |||||||||| | || || |||||||| || |
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| T |
36871889 |
ttacctcaagttggtcaccaaggttgacaacgatggagtggcgcattgggggaacatcaacccactggccatctttgagcaattgtaggccactgacctt |
36871988 |
T |
|
| Q |
175 |
gtcatcttggaagagaaggatgatgccaccagcatctgtgtg |
216 |
Q |
| |
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||||| ||||||||||||||||| || || ||||| ||||| |
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| T |
36871989 |
atcatcctggaagagaaggatgattcctccggcatcggtgtg |
36872030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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