View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10275_low_13 (Length: 241)
Name: NF10275_low_13
Description: NF10275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10275_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41876110 - 41876332
Alignment:
| Q |
1 |
cagtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtacctataagtggtttgttcttatttttatgttaa |
100 |
Q |
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| T |
41876110 |
cagtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtacctataagtggtttgttctcatttttatgttaa |
41876209 |
T |
|
| Q |
101 |
tccatcaaccaaatgttttaaaattttcataaattttagtattctcatctcgattttccaacaaaatgaaaattgtaggcagtggtatggcatcgggagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41876210 |
tccatcaaccaaatgttttaaaattttcataaattttagtattctcttctcgattttccaacaaaatgaaaattgtaggcggtggtatggcatcgggagt |
41876309 |
T |
|
| Q |
201 |
agcattagctgccaaggccatta |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
41876310 |
agcattagctgccaaggccatta |
41876332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 40867956 - 40867741
Alignment:
| Q |
1 |
cagtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtacctataagtggtttgttcttatttttatgttaa |
100 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||| | ||||| ||||| ||||| |||||||||||||| |||| |||| || |
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| T |
40867956 |
cagtggccagggtaccatatccttggagcttctggaacaagcccctcaactagatacacttgtggtaccaataagtggtttgtttgctttttgatgtcaa |
40867857 |
T |
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| Q |
101 |
tccatcaacc-aaatgttttaaaattttcataaattttagtattctcatctcgattttccaacaaaatgaaaattgtaggcagtggtatggcatcgggag |
199 |
Q |
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| T |
40867856 |
accatcatccaaaatgtttcaaaatttgcattgattttggtatccccttcttgattttccaac-aaatgaaaactgcaggaggtggtttgatatcaggag |
40867758 |
T |
|
| Q |
200 |
tagcattagctgccaag |
216 |
Q |
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||||||| ||||||||| |
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| T |
40867757 |
tagcattggctgccaag |
40867741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 24817738 - 24817515
Alignment:
| Q |
2 |
agtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtacctataagtggtttgt--tcttatttttatgtta |
99 |
Q |
| |
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||||||||||||||||||||||||||| || | |||||| |||||| || ||||| ||||||||||| ||||||||||||| ||| |||||| || | |
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| T |
24817738 |
agtggccaaggtaccatatccttggagtttcttgaacaaatccctcaaatcgatacacttgtagtaccaataagtggtttgttctctcttttttacgtca |
24817639 |
T |
|
| Q |
100 |
atccatcaaccaaatgttttaaaattttcataaattttagtattctcatctcgattttccaacaaaatgaaaattgtaggcagtggtatggcatcgggag |
199 |
Q |
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| T |
24817638 |
atccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgattttgttacaaaatgatacttgcaggcggcggtatgatagcaggaa |
24817539 |
T |
|
| Q |
200 |
tagcattagctgccaaggccatta |
223 |
Q |
| |
|
||||| ||||||||||||| |||| |
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| T |
24817538 |
tagcaatagctgccaaggcgatta |
24817515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 24800662 - 24800439
Alignment:
| Q |
2 |
agtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtacctataagtggtttgt--tcttatttttatgtta |
99 |
Q |
| |
|
||||||||||||||||||||||||||| || | |||||| |||||| || ||||| ||||||||||| ||||||||||||| ||| |||||| || | |
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| T |
24800662 |
agtggccaaggtaccatatccttggagtttcttgaacaaatccctcaaatcgatacacttgtagtaccaataagtggtttgttctctcttttttacgtca |
24800563 |
T |
|
| Q |
100 |
atccatcaaccaaatgttttaaaattttcataaattttagtattctcatctcgattttccaacaaaatgaaaattgtaggcagtggtatggcatcgggag |
199 |
Q |
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|||||||| | |||||||| | ||||| |||| | |||||||| ||| | |||||||| ||||||||| | ||| ||| | |||||| | | ||| |
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| T |
24800562 |
atccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgattttgttacaaaatgatacttgcaggtggcggtatgatagcaggaa |
24800463 |
T |
|
| Q |
200 |
tagcattagctgccaaggccatta |
223 |
Q |
| |
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||||| ||||||||||||| |||| |
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| T |
24800462 |
tagcaatagctgccaaggcgatta |
24800439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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