View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10275_low_14 (Length: 234)
Name: NF10275_low_14
Description: NF10275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10275_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 45363038 - 45362823
Alignment:
| Q |
1 |
tgccaagccctgcatctgacaatatggaaatagacttttctatgataacaggcatttcaatattccacctgaatgaaatgagtgaccaagttaggccgat |
100 |
Q |
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| T |
45363038 |
tgccaagccctgcatccgacaatatggaaatagactttgctatgataacaggcatttcaatattccacctgaatgaaatgagtgaccaagttaggccgat |
45362939 |
T |
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| Q |
101 |
aatgctcgaatatgtgtttgggtttctgataagttttctccaaaccattatcaatatcagcctcgtcattatacttgctggtggcatcgtttttgctcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45362938 |
aatgctcgaatatgtgtttgggtttctgataagttttctccaaaccattatcaatatcagcctcgtcattatacttgctggtggcatcgtttttgcccca |
45362839 |
T |
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| Q |
201 |
ccttcctcccctctct |
216 |
Q |
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|||||||||||||||| |
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| T |
45362838 |
ccttcctcccctctct |
45362823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 25040338 - 25040218
Alignment:
| Q |
67 |
acctgaatgaaatgagtgaccaagttaggccgataatgctcgaatatgtgtttgggtttctgataagttttctccaaaccattatcaatatcagcctcgt |
166 |
Q |
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| T |
25040338 |
acctgaatgaaaccaaagaccaagtgagaccaattaagctagaataagtgtttggatttctgataagttttctccaaaccataatcaatataagccttgt |
25040239 |
T |
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| Q |
167 |
cattatacttgctggtggcat |
187 |
Q |
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| T |
25040238 |
catcacactagctggtggcat |
25040218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 25040762 - 25040700
Alignment:
| Q |
1 |
tgccaagccctgcatctgacaatatggaaatagacttttctatgataacaggcatttcaatat |
63 |
Q |
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||||||| ||||||||||||| ||||||||||||||| |||| || ||||||||||||||| |
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| T |
25040762 |
tgccaagtcctgcatctgacagaatggaaatagactttgctataatggcaggcatttcaatat |
25040700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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