View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10275_low_2 (Length: 515)
Name: NF10275_low_2
Description: NF10275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10275_low_2 |
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| [»] scaffold0014 (3 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 56 - 499
Target Start/End: Complemental strand, 69267 - 68821
Alignment:
| Q |
56 |
agaatgtaagtcctcgagatgcttatgtaacacgaattcttaattatnnnnnnn-caattcaaatggttctctcttactaacctacaaagacaaaaatta |
154 |
Q |
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| T |
69267 |
agaatgtaagtcctcgagatgcttatgtaacacgaattcttaattataaaaaaaacaattcaaatggttctctcttaccaacctacaaagacaaaaatta |
69168 |
T |
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| Q |
155 |
ttcaactgtttgacagataaaaa-tgagattatagacaaatactgaagtttgcaaaacctcaaagtaatgctttagagcagaaaaattaatactgagtca |
253 |
Q |
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| T |
69167 |
ttcaactgtttgacagataaaaaatgagactatagacaaatactgaagtttgcaaaacctcaaagtaatgctttagagcagaaaaattaatactgagtca |
69068 |
T |
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| Q |
254 |
tggaccaaagtccttataatttatatgaagttatcatcaatcatatttaaaatccttataatttattttctccttctatccaaaatccattacataaatt |
353 |
Q |
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| T |
69067 |
tcgaccaaagtccttataatttatatgaagttatcatcaatcatatttaaaatccttataatttattttctccttctatccaaaatccattacataaatt |
68968 |
T |
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| Q |
354 |
attaatgaaactataaacttgatcaga-ttcattcaacaatctttccaattcaattgcaggaaacacaggtagttcagcgaattaataggacaattttaa |
452 |
Q |
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| T |
68967 |
attaatgaaactataaacttgatcagacttcattcaacaatctttccaattcaattgcaggaaacacaggtagttcagcgaattaataggacaattttaa |
68868 |
T |
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| Q |
453 |
aaatgatatacattaaataggcaaatcaaacttctacaaattaaaag |
499 |
Q |
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| T |
68867 |
aaatgatatacattaaataggcaaatcaaacttcgacaaattaaaag |
68821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 69364 - 69307
Alignment:
| Q |
1 |
aacttactataaagactcctaaattaagcaaacatatcactagtgtatcaccgaaaga |
58 |
Q |
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| T |
69364 |
aacttactataaagactcctaaattaagcaaacatatcactagtgtatcactgaaaga |
69307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 271 - 351
Target Start/End: Complemental strand, 15100 - 15023
Alignment:
| Q |
271 |
aatttatatgaagttatcatcaatcatatttaaaatccttataatttattttctccttctatccaaaatccattacataaa |
351 |
Q |
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| T |
15100 |
aatttatatgaagttatcatcaatcatattcaaaatctttattatttctttt---cttctaaccaaaatctatcacataaa |
15023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 271 - 351
Target Start/End: Complemental strand, 31993894 - 31993814
Alignment:
| Q |
271 |
aatttatatgaagttatcatcaatcatatttaaaatccttataatttattttctccttctatccaaaatccattacataaa |
351 |
Q |
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| T |
31993894 |
aatttatatgaagttatcatcaaccatattcaaaatccttgttatttcttttctccttttatccgaaatccattacataaa |
31993814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 271 - 351
Target Start/End: Complemental strand, 20975958 - 20975878
Alignment:
| Q |
271 |
aatttatatgaagttatcatcaatcatatttaaaatccttataatttattttctccttctatccaaaatccattacataaa |
351 |
Q |
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| T |
20975958 |
aatttgtattaagttattttcaatcatattcaaaatccttattatttctcttgtccttctatccaaaatctattacataaa |
20975878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 499
Target Start/End: Complemental strand, 41363611 - 41363564
Alignment:
| Q |
452 |
aaaatgatatacattaaataggcaaatcaaacttctacaaattaaaag |
499 |
Q |
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| T |
41363611 |
aaaaggatatacattaaataggcaaagcaaacttctacaaattaaaag |
41363564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 41363767 - 41363724
Alignment:
| Q |
8 |
tataaagactcctaaattaagcaaacatatcactagtgtatcac |
51 |
Q |
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| T |
41363767 |
tataaagactcctaaattaagcaaccatattactagtgtatcac |
41363724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 41363657 - 41363616
Alignment:
| Q |
271 |
aatttatatgaagttatcatcaatcatatttaaaatccttat |
312 |
Q |
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| T |
41363657 |
aatttatatgaagttatcatcaatcatgttcaaaatccttat |
41363616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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