View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10275_low_5 (Length: 351)

Name: NF10275_low_5
Description: NF10275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10275_low_5
NF10275_low_5
[»] chr3 (2 HSPs)
chr3 (11-335)||(16005274-16005598)
chr3 (109-141)||(6136389-6136421)
[»] chr2 (1 HSPs)
chr2 (92-141)||(19245866-19245915)
[»] chr7 (2 HSPs)
chr7 (110-140)||(8629627-8629657)
chr7 (101-141)||(4575007-4575047)
[»] scaffold0186 (1 HSPs)
scaffold0186 (101-141)||(8718-8758)
[»] chr8 (1 HSPs)
chr8 (109-141)||(26879787-26879819)
[»] chr6 (1 HSPs)
chr6 (109-141)||(31108354-31108386)
[»] chr4 (1 HSPs)
chr4 (109-141)||(10394887-10394919)
[»] chr1 (1 HSPs)
chr1 (101-141)||(25146580-25146620)


Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 16005598 - 16005274
Alignment:
Q  11 atgaatcaatgtaaccattcacatacactttagaagagatggcacacccttgtgcaacacggggaagaacttcatcgcctaaagttcaaggggaataaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16005598 atgaatcaatgtaaccattcacatacactttagaagagatggcacacccttgtgcaacacggggaagaacttcatcgcctaaaattcaaggggaataaca 16005499  T
Q  111 aaatcataaatcgtaaaatcgcaatcaaaatgatgaattttgagatttaagttgggatagttaaaacctaatatgcaaaaatcaaagtacctcttccaaa 210  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16005498 aaatcataaatcgtaaaatcgcaatcaaaatcatgaattttgggatttaagttgggatagttaaaacctaatatgcaaaaatcaaagtacctcttccaaa 16005399  T
Q  211 agcttttgcataaccgatttcatatccttcttcataagcagcatcgtttctttgagaagtggtattaagtccatcttggtaaccaatcaagaacacattt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16005398 agcttttgcataaccgatttcatatccttcttcataagcagcatcgtttctttgagaagtggtattaagtccatcttggtaaccaatcaagaacacattt 16005299  T
Q  311 tgttgatgatcattcatcttgaaac 335  Q
    |||||||||||||||||||||||||    
T  16005298 tgttgatgatcattcatcttgaaac 16005274  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 6136389 - 6136421
Alignment:
Q  109 caaaatcataaatcgtaaaatcgcaatcaaaat 141  Q
    |||||||| ||||||||||||||||||||||||    
T  6136389 caaaatcaaaaatcgtaaaatcgcaatcaaaat 6136421  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 19245915 - 19245866
Alignment:
Q  92 aagttcaaggggaataacaaaatcataaatcgtaaaatcgcaatcaaaat 141  Q
    ||||| || ||||||| |||||||| ||||||||||||||||||||||||    
T  19245915 aagttgaaagggaatagcaaaatcaaaaatcgtaaaatcgcaatcaaaat 19245866  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 140
Target Start/End: Original strand, 8629627 - 8629657
Alignment:
Q  110 aaaatcataaatcgtaaaatcgcaatcaaaa 140  Q
    |||||||||||||||||||||||||||||||    
T  8629627 aaaatcataaatcgtaaaatcgcaatcaaaa 8629657  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 4575047 - 4575007
Alignment:
Q  101 gggaataacaaaatcataaatcgtaaaatcgcaatcaaaat 141  Q
    |||||||  ||||||| ||||||||||||||||||||||||    
T  4575047 gggaatagtaaaatcaaaaatcgtaaaatcgcaatcaaaat 4575007  T

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Target: scaffold0186 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 8758 - 8718
Alignment:
Q  101 gggaataacaaaatcataaatcgtaaaatcgcaatcaaaat 141  Q
    |||||||||||||||  || |||||||||||||||||||||    
T  8758 gggaataacaaaatcggaactcgtaaaatcgcaatcaaaat 8718  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 26879819 - 26879787
Alignment:
Q  109 caaaatcataaatcgtaaaatcgcaatcaaaat 141  Q
    |||||||| ||||||||||||||||||||||||    
T  26879819 caaaatcaaaaatcgtaaaatcgcaatcaaaat 26879787  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 31108386 - 31108354
Alignment:
Q  109 caaaatcataaatcgtaaaatcgcaatcaaaat 141  Q
    ||||||| |||||||||||||||||||||||||    
T  31108386 caaaatcgtaaatcgtaaaatcgcaatcaaaat 31108354  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 10394919 - 10394887
Alignment:
Q  109 caaaatcataaatcgtaaaatcgcaatcaaaat 141  Q
    |||||||| ||||||||||||||||||||||||    
T  10394919 caaaatcaaaaatcgtaaaatcgcaatcaaaat 10394887  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 25146580 - 25146620
Alignment:
Q  101 gggaataacaaaatcataaatcgtaaaatcgcaatcaaaat 141  Q
    ||||||| |||||||  ||||||||||||||||||||||||    
T  25146580 gggaatagcaaaatcggaaatcgtaaaatcgcaatcaaaat 25146620  T

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