View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10275_low_7 (Length: 273)
Name: NF10275_low_7
Description: NF10275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10275_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 6066300 - 6066562
Alignment:
| Q |
1 |
cctttcatttttctcatgtctttgttctccaactcttcgttatagtaatattatcaaattttatttgtggggaactacctctaattccaataatattatc |
100 |
Q |
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| T |
6066300 |
cctttcatttttctcatgtctttgttctccaactcttcattatagtaatattattaaattttatttgtggggaactacctctaattccaataatattatc |
6066399 |
T |
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| Q |
101 |
tgctaaataatttatccttaacaaaaataataacagttgatgcctataaatagaaaaaagattatagaatgaaaatcttattattcatatagatttgaga |
200 |
Q |
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| T |
6066400 |
tgctaaataatttatccttaacaaaaataataacacttgaggcctataaatagaaaaaagattatagaatgaaaatctttttattcatatagatttgaga |
6066499 |
T |
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| Q |
201 |
tttattaggcaattgagagagttcatagtctatcaattaatctgttcttttcctcaattcatc |
263 |
Q |
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| T |
6066500 |
tttattaggcaattgagagagttcatagtctatcaattaatctgttcttttcctcaattcatc |
6066562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 6069281 - 6069389
Alignment:
| Q |
7 |
atttttctcatgtctttgttctccaactcttcgttatagtaatattatcaaattttatttgtggggaactacctctaattccaataatattatctgctaa |
106 |
Q |
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| T |
6069281 |
atttttctcatgtctttgttctccaactcttcattatagtaatatcctcaaattttatttgtggggaagtacctctaattccaataatattagctgctaa |
6069380 |
T |
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| Q |
107 |
ataatttat |
115 |
Q |
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| T |
6069381 |
atagtttat |
6069389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 6069449 - 6069520
Alignment:
| Q |
188 |
tatagatttgagatttattaggcaattgagagagttcatagtctatcaattaatctgttcttttcctcaatt |
259 |
Q |
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| T |
6069449 |
tatagatttgaggtttattaggcaagtgtgagagtccagagtctgtcaattaatctgttcttttcctcaatt |
6069520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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