View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10275_low_8 (Length: 252)
Name: NF10275_low_8
Description: NF10275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10275_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 48 - 234
Target Start/End: Complemental strand, 7085060 - 7084874
Alignment:
| Q |
48 |
aaataccttaaataatatatggtcaataccaagctgaatatccttaaaagcctcacgagcttgtcttctagcaggaacttcatccatttttgcatccaat |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7085060 |
aaataccttaaataatatatggtcaataccaagctgaatatccttaaaagcctcacgagcttgtcttctagcaggaacttcatccatttttgcatccaat |
7084961 |
T |
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| Q |
148 |
ttcttctgcaattcattatcaacacctggtaacctcttcatccttgataaattttttataccttcacctttctttttctctctcacc |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7084960 |
ttcttctgcaattcattatcaacacctggtaacctcttcatccttgataaattttttataccttcacctttctttttctctctcacc |
7084874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 46 - 234
Target Start/End: Original strand, 8807358 - 8807546
Alignment:
| Q |
46 |
ataaataccttaaataatatatggtcaataccaagctgaatatccttaaaagcctcacgagcttgtcttctagcaggaacttcatccatttttgcatcca |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8807358 |
ataaataccttaaataatatatggtcaataccaagctgaatatccttaaaagcctcacgagcttgtcttctagcaggaacttcatccatttttgcatcca |
8807457 |
T |
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| Q |
146 |
atttcttctgcaattcattatcaacacctggtaacctcttcatccttgataaattttttataccttcacctttctttttctctctcacc |
234 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8807458 |
atttcttctgcaattcataatcaacacctggtaacctcttcatccttgataaaatttttataccttcacctttctttttctctctcacc |
8807546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 1400887 - 1400756
Alignment:
| Q |
51 |
taccttaaataatatatggtcaataccaagctgaatatccttaaaagcctcacgagcttgtcttctagcaggaacttcatccatttttgcatccaatttc |
150 |
Q |
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||||||||| | ||| || ||||| |||||||||| ||||||||| || |||||||||||||||||||||| ||| | |||||| || |||||||| || |
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| T |
1400887 |
taccttaaagagtatgtgatcaattccaagctgaacatccttaaaggcttcacgagcttgtcttctagcagaaacatgatccatattagcatccaaaatc |
1400788 |
T |
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| Q |
151 |
ttctgcaattcattatcaacacctggtaacct |
182 |
Q |
| |
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|| ||||||||||| ||||| ||||| ||||| |
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| T |
1400787 |
ttttgcaattcattgtcaactcctggaaacct |
1400756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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