View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10275_low_9 (Length: 250)

Name: NF10275_low_9
Description: NF10275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10275_low_9
NF10275_low_9
[»] chr7 (2 HSPs)
chr7 (1-242)||(41875669-41875910)
chr7 (3-54)||(5269468-5269519)
[»] chr2 (1 HSPs)
chr2 (3-47)||(3423849-3423893)
[»] chr1 (4 HSPs)
chr1 (5-57)||(36641810-36641862)
chr1 (65-119)||(24817795-24817849)
chr1 (159-216)||(24817944-24818001)
chr1 (3-43)||(45234146-45234186)
[»] chr8 (3 HSPs)
chr8 (145-216)||(40868457-40868528)
chr8 (6-47)||(31705029-31705070)
chr8 (5-54)||(41620374-41620423)
[»] chr4 (1 HSPs)
chr4 (7-47)||(1404367-1404407)
[»] chr3 (1 HSPs)
chr3 (3-59)||(32069084-32069139)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 41875910 - 41875669
Alignment:
Q  1 ttaaataatttgaccttattttatcttttagtacagaaataacttatttataagtaagtacttatataataagtgtttttgctactaacacaaaattaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41875910 ttaaataatttgaccttattttatcttttagtacagaaataacttatttataagtaagtacttatataataagtgtttttgctactaacacaaaattaag 41875811  T
Q  101 ttgtttatctaaataagtcttggatgatctataatcaacattaatcaacattcgacactctacctcagtatgcggccatcattagaagaaggtgtaaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41875810 ttgtttatctaaataagtcttggatgatctataatcaacattaatcaacattcgacactctacctcagtatgcggccatcattagaagaaggtataaata 41875711  T
Q  201 tagcaccggtttcttgtcgcaatatattcgcaacttcttctc 242  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  41875710 tagcaccggtttcttgtcgtaatatatacgcaacttcatctc 41875669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 5269519 - 5269468
Alignment:
Q  3 aaataatttgaccttattttatcttttagtacagaaataacttatttataag 54  Q
    |||||||||||| ||||||||||||||| || |||||||| |||| ||||||    
T  5269519 aaataatttgactttattttatcttttattaaagaaataatttatatataag 5269468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 3423849 - 3423893
Alignment:
Q  3 aaataatttgaccttattttatcttttagtacagaaataacttat 47  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||    
T  3423849 aaataatttgactttattttatcttttggtacaaaaataacttat 3423893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 36641862 - 36641810
Alignment:
Q  5 ataatttgaccttattttatcttttagtacagaaataacttatttataagtaa 57  Q
    |||||||||| ||||||||||||||  || ||||||||||||| |||||||||    
T  36641862 ataatttgactttattttatcttttgttatagaaataacttatatataagtaa 36641810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 24817795 - 24817849
Alignment:
Q  65 tataataagtgtttttgctactaacacaaaattaaattgtttatctaaataagtc 119  Q
    |||||||||||||| || ||| ||||| || |||| |||||||||||||||||||    
T  24817795 tataataagtgtttatgttacaaacactaagttaagttgtttatctaaataagtc 24817849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 24817944 - 24818001
Alignment:
Q  159 tctacctcagtatgcggccatcattagaagaaggtgtaaatatagcaccggtttcttg 216  Q
    ||||||||| ||||||||||||||| ||||||||| || | |||||||  ||||||||    
T  24817944 tctacctcattatgcggccatcatttgaagaaggtatatagatagcacttgtttcttg 24818001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 45234186 - 45234146
Alignment:
Q  3 aaataatttgaccttattttatcttttagtacagaaataac 43  Q
    |||||||||||| ||||||||||||||| || |||||||||    
T  45234186 aaataatttgactttattttatcttttattatagaaataac 45234146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 40868457 - 40868528
Alignment:
Q  145 tcaacattcgacactctacctcagtatgcggccatcattagaagaaggtgtaaatatagcaccggtttcttg 216  Q
    ||||||||| ||| | |||||||||||||| ||||||||| ||| | || |||| |||||||| ||||||||    
T  40868457 tcaacattcaacagtgtacctcagtatgcgcccatcattataaggatgtataaaaatagcaccagtttcttg 40868528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 31705070 - 31705029
Alignment:
Q  6 taatttgaccttattttatcttttagtacagaaataacttat 47  Q
    ||||||||| | |||||||||||||||||||||||| |||||    
T  31705070 taatttgacatgattttatcttttagtacagaaatagcttat 31705029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 41620374 - 41620423
Alignment:
Q  5 ataatttgaccttattttatcttttagtacagaaataacttatttataag 54  Q
    |||||||||| ||||||||||||||  |||| ||||||||||| ||||||    
T  41620374 ataatttgactttattttatcttttgttacaaaaataacttatatataag 41620423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 1404407 - 1404367
Alignment:
Q  7 aatttgaccttattttatcttttagtacagaaataacttat 47  Q
    |||||||||||||||||||||||| || ||||||| |||||    
T  1404407 aatttgaccttattttatcttttattatagaaatagcttat 1404367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 32069139 - 32069084
Alignment:
Q  3 aaataatttgaccttattttatcttttagtacagaaataacttatttataagtaagt 59  Q
    |||| ||||||| ||||||||||||||  || ||||||||||||||||||| |||||    
T  32069139 aaattatttgactttattttatcttttt-tatagaaataacttatttataattaagt 32069084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University