View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10276_high_1 (Length: 575)
Name: NF10276_high_1
Description: NF10276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10276_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 7 - 559
Target Start/End: Original strand, 37623998 - 37624553
Alignment:
| Q |
7 |
gaggagaagcataggctgtacaggagttgaacgataaaagtgataatgatttgaaagctgctgtgagttagagagggactgctgatatttaatactctgt |
106 |
Q |
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| T |
37623998 |
gaggtgaagcacaggctgtacaggagttgaacgataaaagtgataatgatttgaaagctgctgtgagttagagagggactgctgatatttaatactctgt |
37624097 |
T |
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| Q |
107 |
t---acagatatttatgttattgcattttatggaaatggtgattttttccttcacccgtgaaaattgaatgcgaaatttatgtgaaccttgcattagtta |
203 |
Q |
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| T |
37624098 |
tgttacagatatttatgttattgcattttatggaaatggtgattttttccttcacccgtgaaaattgaatgcgaaatttatgtgaaccttgcattagtta |
37624197 |
T |
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| Q |
204 |
ctaagacagtccctgactccctggttctaaagcttcaatagtactcatttgtattagtactcatactctaaagcttcaatagtctgcataagttgttttc |
303 |
Q |
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| T |
37624198 |
ctaagacagtccctgactccctggttctaaagcttcaatagtactcatttgtattagtactcatactctaaagcttcaatagtctgcataagttgttttc |
37624297 |
T |
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| Q |
304 |
tgagaaatttaacactctgttgtaacatacttatgctattgcatttacataaatgttgattttttcttttacccatgaatgttaaatgataaaattgtga |
403 |
Q |
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| T |
37624298 |
tgagaaatttaacactctgttgtaacatacttatgctattgcatttacataaatgttgattttttcttttacccatgaatgttaaatgataaaactgtga |
37624397 |
T |
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| Q |
404 |
acctcggtcgttagtttcgaaggcatacttttgaaagtttacatacnnnnnnnatgagagcccctttttgagttgagaggttctgtgtaagagattattc |
503 |
Q |
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| T |
37624398 |
acctcggtcattagtttcgaaggcatacttttgaaagtttacatactttttttatgagagcccctttttgagttgagaggttctgtgcaagagattaatc |
37624497 |
T |
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| Q |
504 |
ccagcttattaatgacataaaactggtagattgttgtcaaattcgtagatactttt |
559 |
Q |
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| T |
37624498 |
ccagcttattaatgacataaaactggtagattgttgtcaaattcgtagatactttt |
37624553 |
T |
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