View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10276_low_3 (Length: 348)

Name: NF10276_low_3
Description: NF10276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10276_low_3
NF10276_low_3
[»] chr1 (1 HSPs)
chr1 (4-343)||(24975691-24976029)
[»] chr5 (4 HSPs)
chr5 (4-343)||(23490410-23490744)
chr5 (4-242)||(13537623-13537860)
chr5 (4-131)||(42790481-42790608)
chr5 (202-279)||(42790657-42790733)
[»] scaffold0096 (1 HSPs)
scaffold0096 (4-343)||(24328-24666)
[»] chr6 (3 HSPs)
chr6 (4-341)||(27963588-27963924)
chr6 (4-282)||(18733957-18734234)
chr6 (125-303)||(19861955-19862132)
[»] chr4 (5 HSPs)
chr4 (29-333)||(18278375-18278678)
chr4 (4-166)||(3844146-3844307)
chr4 (4-229)||(15311016-15311241)
chr4 (38-169)||(10268088-10268219)
chr4 (233-280)||(10268273-10268320)
[»] scaffold0008 (1 HSPs)
scaffold0008 (10-291)||(251332-251612)
[»] scaffold0034 (1 HSPs)
scaffold0034 (4-306)||(26662-26963)
[»] chr2 (2 HSPs)
chr2 (58-282)||(23927793-23928015)
chr2 (1-95)||(27345491-27345585)
[»] scaffold0433 (1 HSPs)
scaffold0433 (4-166)||(10853-11014)
[»] scaffold0192 (1 HSPs)
scaffold0192 (4-258)||(8027-8286)
[»] scaffold0002 (1 HSPs)
scaffold0002 (4-307)||(386543-386845)
[»] scaffold0063 (1 HSPs)
scaffold0063 (100-282)||(39524-39705)
[»] chr8 (2 HSPs)
chr8 (98-191)||(24039908-24040001)
chr8 (4-44)||(16093051-16093091)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 4 - 343
Target Start/End: Complemental strand, 24976029 - 24975691
Alignment:
Q  4 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||    
T  24976029 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaacgccaaaggtggccttcctccgtggttgg 24975930  T
Q  104 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 203  Q
    ||||| | | |||||| |||||||||||||||||||||||||||||||||||  ||||||||| ||||| | ||||||||| ||| ||||||||  ||||    
T  24975929 agggggctagcaagtttacactcatgagttcctcgaactttctcttcatgctctccatggagacgttcagtgttcctcccgtgataacgttggcggaggg 24975830  T
Q  204 gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga 303  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||||||||||| ||    
T  24975829 gaactgctcccaggtgcatgaata-aggggtgatttccacgttgtcagggaagtcaccgagatgttctatggacatggcaactgtcttaccaggctctga 24975731  T
Q  304 gccgtcaatgatgagttcgacggtctttctctctgcttct 343  Q
    ||| |||| ||| || |||||||| ||||| |||||||||    
T  24975730 gccatcaacgataagctcgacggtttttctttctgcttct 24975691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 343
Target Start/End: Original strand, 23490410 - 23490744
Alignment:
Q  4 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||| |    
T  23490410 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaagaagttctgaatcatagaatgccaaaggtggccttcctccgtggttcg 23490509  T
Q  104 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 203  Q
    || || | | |||    ||||||||||||||||||||||||||||||||||| |||||||||| ||| | | ||||||| | ||| ||||||||  ||||    
T  23490510 agagggctagcaa----acactcatgagttcctcgaactttctcttcatgctccccatggagacgtttagtgttcctcctgtgataacgttggcggaggg 23490605  T
Q  204 gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga 303  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||    
T  23490606 gaactgctcccaggtgcatgagtaacggg-tgatttccacgttgtcagggaaatcaccgagatgttccacagacatggcaactatcttaacaggctcgga 23490704  T
Q  304 gccgtcaatgatgagttcgacggtctttctctctgcttct 343  Q
    | |||| | |||||| |||||||||||||| || ||||||    
T  23490705 gtcgtccacgatgagctcgacggtctttctttccgcttct 23490744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 13537623 - 13537860
Alignment:
Q  4 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 103  Q
    ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||   ||||||    
T  13537623 gccattgatgctcgcacgagcaaaggaatgactgaatttgaaactccaccaggaagttttgaatcatagaatgccaaaggtggtcttcctctgtggttgg 13537722  T
Q  104 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 203  Q
    ||||  ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||| | ||||||||| ||||||||||||| ||||    
T  13537723 agggagccagcaagttgacactcatgagttcctcaaactttctcttcatgcttcccatggagacattcagtgttcctcccgtgatgacgttggcagaggg 13537822  T
Q  204 gaactgctcccaggtgcatgagtaggggggtgatttcca 242  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  13537823 gaactgctcccaggtgcatgagta-aggggtgatttcca 13537860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 42790481 - 42790608
Alignment:
Q  4 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 103  Q
    ||||| |||||||  |||| ||| |||||||||| |||||||| |||||| ||||||||||| || ||||| ||||| ||||| || ||||| |||||||    
T  42790481 gccattgatgctcatacgaacaatggaatggctgcatttgaagatccaccgggaagttctgagtcgtagaacgccaagggtggtctccctccgaggttgg 42790580  T
Q  104 aggggaccaacaagttgacactcatgag 131  Q
    | ||| ||| ||||||||| ||||||||    
T  42790581 aaggggccagcaagttgacgctcatgag 42790608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 279
Target Start/End: Original strand, 42790657 - 42790733
Alignment:
Q  202 gggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacat 279  Q
    |||||||| ||||| |||||||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||    
T  42790657 gggaactgttcccaagtgcatgagtaggggg-tgattcccacgttgtcagggaaatcacccagctgttccacggacat 42790733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 4 - 343
Target Start/End: Complemental strand, 24666 - 24328
Alignment:
Q  4 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 103  Q
    |||||||||||| | || || |||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  | ||||    
T  24666 gccatcgatgcttgtactagaaaaggaatggcttagtttgaagctccgccaggaagttctgaatcatagaatgccaaaggtggccttcctccgtgattgg 24567  T
Q  104 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 203  Q
    ||||| | | |||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| | ||||||||| ||| |  |||||  ||||    
T  24566 agggggctagcaagttgacactcatgagttcctcgaacttcctcttcatgctccccatggagacgttcagtgttcctcccgtgataaaattggcggaggg 24467  T
Q  204 gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga 303  Q
    |||||||| ||| |||||||||||   |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| ||    
T  24466 gaactgctgccacgtgcatgagta-aagggtgatttccacgttctcaggcaaatcaccgagatgttccacggacatggcaactgtcttaccagactcaga 24368  T
Q  304 gccgtcaatgatgagttcgacggtctttctctctgcttct 343  Q
    ||| ||||||||||| |||||||||||||| || ||||||    
T  24367 gccatcaatgatgagctcgacggtctttctttccgcttct 24328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 4 - 341
Target Start/End: Original strand, 27963588 - 27963924
Alignment:
Q  4 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 103  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||  ||||||    
T  27963588 gccatcgatgctcgtacgagcaaaggaatggctgaatttgaagctctacaaggaagttctgaatcatagaacgccaaaggtggccttcctccgtggttgg 27963687  T
Q  104 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 203  Q
    ||||| | | ||||||||||||||||||||| || || |||||||||||||| |||||||||| ||| |   ||||||||| ||| ||||||||  ||||    
T  27963688 agggggctagcaagttgacactcatgagttcttcaaaatttctcttcatgctccccatggagacgtttagcgttcctcccgtgataacgttggcggaggg 27963787  T
Q  204 gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga 303  Q
     ||||| ||||| |||||||||||  |||||| |||||| |||||| ||||||||||||||||||| ||||||||||| ||||  |||||||||||||||    
T  27963788 aaactgttcccacgtgcatgagta-aggggtggtttccaagttgtccgggaaatcaccgagatgtttcacggacatggaaactgccttaccaggctcgga 27963886  T
Q  304 gccgtcaatgatgagttcgacggtctttctctctgctt 341  Q
    |||||| | || ||| |||||||||||||| |||||||    
T  27963887 gccgtctacgacgagctcgacggtctttctttctgctt 27963924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 4 - 282
Target Start/End: Original strand, 18733957 - 18734234
Alignment:
Q  4 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 103  Q
    ||||| |||||||| |||||||| |||||| |||||||||| |||||||| || ||||||||||  ||||| |||| ||||||  | ||    |||||||    
T  18733957 gccattgatgctcgtacgagcaacggaatgactgaatttgaggctccacctggtagttctgaattgtagaacgccagaggtggtttacccttgaggttgg 18734056  T
Q  104 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 203  Q
    ||||  ||| ||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||| |   ||||||||| ||||||||||||| ||||    
T  18734057 agggttccagcaagttgacacttttgagttcttcgaactttctcttcatgcttcccatggagatgttgaccgttcctcccgtgatgacgttggcagaggg 18734156  T
Q  204 gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggc 282  Q
     ||||||||| ||||| ||||||| |||||||||||||| ||| ||| |||||||||| |||||||| |||||||||||    
T  18734157 aaactgctcctaggtgaatgagta-gggggtgatttccaagttatcaaggaaatcacccagatgttcaacggacatggc 18734234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 125 - 303
Target Start/End: Complemental strand, 19862132 - 19861955
Alignment:
Q  125 tcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatga 224  Q
    ||||||| || ||||| || ||||||||| |||||||||||||||  |   ||||||  | |||| |||||||  ||||||||||||||||||||| |||    
T  19862132 tcatgagctcttcgaatttcctcttcatgtttcccatggagatgtctagcgttcctcttgtgatgccgttggcggaggggaactgctcccaggtgcttga 19862033  T
Q  225 gtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga 303  Q
    |||| ||||||||||| |  |  | | |||||||||| |||||||| ||||| |||| |||| |||| | |||||||||    
T  19862032 gtag-ggggtgatttctatatcttgaaggaaatcacccagatgttcaacggatatggaaactgtcttgcgaggctcgga 19861955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 29 - 333
Target Start/End: Complemental strand, 18278678 - 18278375
Alignment:
Q  29 gaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcat 128  Q
    |||||| | |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||  || | |||||| | | |||||||| ||||||    
T  18278678 gaatgggtaaatttgaagctccatcgggaagttctgaatcatagaatgccaaaggtggccttcctccgtgggtagagggggctagcaagttgatactcat 18278579  T
Q  129 gagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatgagtag 228  Q
    ||| |||| ||||||||||||||||||  ||||||||| ||||  | ||||||||| ||||||||||||  ||||||| || |||||||||||||||||     
T  18278578 gagatccttgaactttctcttcatgctgtccatggagacgttcggtgttcctcccgtgatgacgttggcggaggggaaatgttcccaggtgcatgagta- 18278480  T
Q  229 gggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcggagccgtcaatgatgagttcgacggtc 328  Q
      |||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| |||||||||| |||||| |||||||||    
T  18278479 acgggtgatttcgacgttgtcagggaaatcaccgagatgttccacggacttggcgactgtcttaccaggctcagagccgtcaacgatgagctcgacggtc 18278380  T
Q  329 tttct 333  Q
    |||||    
T  18278379 tttct 18278375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 166
Target Start/End: Original strand, 3844146 - 3844307
Alignment:
Q  4 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 103  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||   ||||||    
T  3844146 gccatcgatg-tcgcacgagtaaaggaatggctgaatttgaagctccaccaggaagttccgaatcatagaattccaaacgtggccttcctctgtggttgg 3844244  T
Q  104 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggaga 166  Q
    | ||  ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3844245 aaggagccagcaagttgacactcatgagttcctcgaactttctcttcatgcttctcatggaga 3844307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 15311016 - 15311241
Alignment:
Q  4 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 103  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| || |||||  | || ||||| ||||||||||| |||||||||  |||||    
T  15311016 gccatcgatgctcgcacgagcaaaggaatggcaaaatttgaagctccaccgggcagttcgtagtcgtagaacgccaaaggtggtcttcctccattgttgg 15311115  T
Q  104 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 203  Q
    ||||| ||| ||||||||| |||||||| |  | ||| ||  |||||||| ||||||||||||||| || ||||||||| | ||||||||||||  ||||    
T  15311116 agggggccagcaagttgacgctcatgagctttttgaatttcttcttcatgattcccatggagatgtccagtattcctcctgtgatgacgttggcggaggg 15311215  T
Q  204 gaactgctcccaggtgcatgagtagg 229  Q
    ||| || ||||| |||||||| ||||    
T  15311216 gaattgttcccatgtgcatgactagg 15311241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 10268088 - 10268219
Alignment:
Q  38 aatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctc 137  Q
    ||||||| |||||||| || |||||  | || ||||| |||||| |||| ||||||| | ||||||||||||||| ||||||||| |||||||| || ||    
T  10268088 aatttgaggctccaccgggcagttcgtagtcgtagaacgccaaaagtggtcttcctctatggttggaggggaccagcaagttgacgctcatgagctcttc 10268187  T
Q  138 gaactttctcttcatgcttcccatggagatgt 169  Q
    ||| || |||||||||||||||||||| ||||    
T  10268188 gaatttcctcttcatgcttcccatggaaatgt 10268219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 10268273 - 10268320
Alignment:
Q  233 gtgatttccacgttgtcagggaaatcaccgagatgttccacggacatg 280  Q
    |||||||| | |||||| ||||||||||| ||||||||||||||||||    
T  10268273 gtgatttctatgttgtcggggaaatcacccagatgttccacggacatg 10268320  T

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Target: scaffold0008 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 10 - 291
Target Start/End: Original strand, 251332 - 251612
Alignment:
Q  10 gatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttggagggga 109  Q
    ||||||||||||||||||||||||||||||||||| |||||||  || |||||||| || |||||||||| |||| | |||||||||  ||||||||||     
T  251332 gatgctcgcacgagcaaaggaatggctgaatttgaggctccactgggtagttctgagtcgtagaatgccataggtagtcttcctccattgttggaggggg 251431  T
Q  110 ccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggggaactg 209  Q
    ||| || ||| || ||||| || || ||||||||||||||||||||||||||| |||||||||   |||| |||| ||||||||||||  |||| |||||    
T  251432 ccagcaggttcacgctcattagctcttcgaactttctcttcatgcttcccatgaagatgttcagcgttccgcccgtgatgacgttggcggagggaaactg 251531  T
Q  210 ctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttctt 291  Q
     ||||||||||||||||| ||||||||||||||| |||||||||||||  || |||||||||||||||||||| ||| ||||    
T  251532 ttcccaggtgcatgagta-gggggtgatttccacattgtcagggaaattgcccagatgttccacggacatggcgactatctt 251612  T

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Target: scaffold0034 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 306
Target Start/End: Complemental strand, 26963 - 26662
Alignment:
Q  4 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 103  Q
    |||||||||||| || ||||||||||||||||  ||||||||||||||||||| ||||| || || ||||| || |||||||| ||||||||  ||||||    
T  26963 gccatcgatgcttgcgcgagcaaaggaatggcataatttgaagctccaccaggtagttcggagtcgtagaacgcgaaaggtggtcttcctccgtggttgg 26864  T
Q  104 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 203  Q
    ||||||| | ||||||||| |||||||| || ||||| || ||||||||||||||||||||||||| ||   |||||||   ||||||||||||| ||||    
T  26863 aggggactagcaagttgacgctcatgagctcttcgaatttcctcttcatgcttcccatggagatgtccagcgttcctcctatgatgacgttggcagaggg 26764  T
Q  204 gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga 303  Q
    ||||||| || || |||||||||| | |||||||||| |  |  |||||||||||||| || |||||||| |||||||||||| |||| |||||||||||    
T  26763 gaactgcacctagctgcatgagta-gcgggtgatttctatatcttcagggaaatcacccagttgttccacagacatggcaactgtcttgccaggctcgga 26665  T
Q  304 gcc 306  Q
    |||    
T  26664 gcc 26662  T

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Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 58 - 282
Target Start/End: Original strand, 23927793 - 23928015
Alignment:
Q  58 agttctgaatcatagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttc 157  Q
    |||||||| || ||||| ||||||||| | ||||||||| ||||||||||| ||| || ||||||||||||||| || ||||| ||||||||||||||||    
T  23927793 agttctgagtcgtagaacgccaaaggtagtcttcctccacggttggagggggccagcaggttgacactcatgagctcttcgaattttctcttcatgcttc 23927892  T
Q  158 ccatggagatgttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaat 257  Q
    ||||| |||||||||   ||||||||| ||||||||||||  |||| ||||| ||||||||||||| |||  ||||||||||||||||||||||||||||    
T  23927893 ccatgcagatgttcagcgttcctcccgtgatgacgttggcggagggaaactgttcccaggtgcatgtgta--ggggtgatttccacgttgtcagggaaat 23927990  T
Q  258 caccgagatgttccacggacatggc 282  Q
    | || |||||||||||  |||||||    
T  23927991 cgcccagatgttccacaaacatggc 23928015  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 27345491 - 27345585
Alignment:
Q  1 tttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctcc 95  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  27345491 tttgccatcgatgcttgcacgagcaaaggaatggctgaatttgaagccccaccgggaagttctgaatcatagaatgccaaaggtggccttcctcc 27345585  T

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Target: scaffold0433 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 166
Target Start/End: Complemental strand, 11014 - 10853
Alignment:
Q  4 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 103  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||   ||||||    
T  11014 gccatcgatg-tcgcacgagtaaaggaatggctgaatttgaagctccaccaggaagttccgaatcatagaattccaaacgtggccttcctctgtggttgg 10916  T
Q  104 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggaga 166  Q
    | ||  ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10915 aaggagccagcaagttgacactcatgagttcctcgaactttctcttcatgcttctcatggaga 10853  T

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Target: scaffold0192 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 8027 - 8286
Alignment:
Q  4 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 103  Q
    |||||||||||||||||||||||| ||||||||||||||||| | |||| ||| ||||| || || ||||||||||| ||||| |||||||| | |||||    
T  8027 gccatcgatgctcgcacgagcaaatgaatggctgaatttgaacccccactaggcagttcagagtcgtagaatgccaagggtggtcttcctccgatgttgg 8126  T
Q  104 ag------gggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggc 197  Q
    |       ||||||| ||| |||||||||||||| ||||| || ||||| ||||||||||| || ||||| || | | ||||||||| ||||||||||||    
T  8127 aatcaaaagggaccagcaaattgacactcatgagctcctcaaattttctattcatgcttcctatagagatatttactgttcctcccgtgatgacgttggc 8226  T
Q  198 ataggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatc 258  Q
    | | |||||||| |||||||||||||||||  ||   ||||||||| ||||||||||||||    
T  8227 agaagggaactgttcccaggtgcatgagta-aggtacgatttccacattgtcagggaaatc 8286  T

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Target: scaffold0002 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 307
Target Start/End: Original strand, 386543 - 386845
Alignment:
Q  4 gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg 103  Q
    |||||||||||||  || |||||||| ||||| |||||||| ||||||| ||| || ||  | || | ||| | ||  ||||| ||||||||  ||||||    
T  386543 gccatcgatgctcatacaagcaaaggtatggcagaatttgaggctccactaggtagctccaagtcgtggaacgtcaggggtggtcttcctccgtggttgg 386642  T
Q  104 aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg 203  Q
    ||||||| || ||||| || ||| |||| || || || || ||||||||||||||||||||||||| |||  ||||||  | ||||| ||||||  ||||    
T  386643 aggggacaaaaaagttaacgctcgtgagctcttcaaatttcctcttcatgcttcccatggagatgtccaacgttcctctagtgatgatgttggcggaggg 386742  T
Q  204 gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga 303  Q
    |||||| |||||||| |||||||| ||||| |||||| | |||||| ||||||||| | |||||||||||  ||||||||||  | || |||||||||||    
T  386743 gaactgttcccaggttcatgagta-gggggcgatttcaaggttgtcggggaaatcatctagatgttccacaaacatggcaacagttttgccaggctcgga 386841  T
Q  304 gccg 307  Q
    ||||    
T  386842 gccg 386845  T

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Target: scaffold0063 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 100 - 282
Target Start/End: Complemental strand, 39705 - 39524
Alignment:
Q  100 ttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcat 199  Q
    ||||||||||||| || |||||| ||||||||||| || || ||||| |||||||||||||||||||||||||   ||||||||| |||||||||| |      
T  39705 ttggaggggaccagcaggttgacgctcatgagttcttcaaaatttcttttcatgcttcccatggagatgttcatcgttcctcccgtgatgacgttgacgg 39606  T
Q  200 aggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggc 282  Q
    | || ||||| |||||| |||||||||||||    || ||||||||||||||| |||||||| | ||| |||||| |||||||    
T  39605 atggaaactgttcccagctgcatgagtagggtac-gacttccacgttgtcaggaaaatcacccaaatgatccacgtacatggc 39524  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 24039908 - 24040001
Alignment:
Q  98 ggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgac 191  Q
    ||||||||||||||| ||||||||| |||||||| || ||||| || ||||||||||||||||||||||||| |||  ||||||| | ||||||    
T  24039908 ggttggaggggaccagcaagttgacgctcatgagctcttcgaatttcctcttcatgcttcccatggagatgtccaacgttcctcctgtgatgac 24040001  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 16093091 - 16093051
Alignment:
Q  4 gccatcgatgctcgcacgagcaaaggaatggctgaatttga 44  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  16093091 gccattgatgctcgcccgagcaaaggaatggctgaatttga 16093051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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