View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10276_low_5 (Length: 251)
Name: NF10276_low_5
Description: NF10276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10276_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4751033 - 4750794
Alignment:
| Q |
1 |
aaacggacatattctctgaaatctttgaaaactgagaaatgaacataatgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagt |
100 |
Q |
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| T |
4751033 |
aaacggacatattctctgaaatctttgaaaactgagaaatgaacataatgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagt |
4750934 |
T |
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| Q |
101 |
tgggggtggaagggaggccgctttgagatgtttataaaaatggataagggtaggggtaggatgtagaatcacatgttaatgcctcgtttgataaaactgc |
200 |
Q |
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| T |
4750933 |
tgggggcggaagggaggccgctttgagatgtttataaaaatgggtaagggtaggggtaggatgtagaatcacatgttaatgcctcatttgataaaactgc |
4750834 |
T |
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| Q |
201 |
caaacaagttgcgtgtttatgtaaagcatctttccctttg |
240 |
Q |
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| T |
4750833 |
caaacaagttgcatgtttatgtaaagcatctttcgctttg |
4750794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 33 - 240
Target Start/End: Complemental strand, 4750795 - 4750588
Alignment:
| Q |
33 |
tgagaaatgaacataatgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggtggaagggaggccgctttgagatgtt |
132 |
Q |
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| T |
4750795 |
tgagaaatgaacataatgagaggtttggtttctttctctttgtttggatgtttaaaatccaccaaagttgggggcggaagggaggccgctttgagatgtt |
4750696 |
T |
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| Q |
133 |
tataaaaatggataagggtaggggtaggatgtagaatcacatgttaatgcctcgtttgataaaactgccaaacaagttgcgtgtttatgtaaagcatctt |
232 |
Q |
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| T |
4750695 |
tataaaaatgggtaagggtaggggtaggatgtagaatcacatgttaatgcctcatttgataaaactgccaaacaagttgcatgtttatgtaaagcatctt |
4750596 |
T |
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| Q |
233 |
tccctttg |
240 |
Q |
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| T |
4750595 |
tccctttg |
4750588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 51322713 - 51322911
Alignment:
| Q |
22 |
tctttgaaaactgagaaatgaacataat----gagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggtggaagggagg |
117 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51322713 |
tctttgaaaactgagaaatgaacataattaatgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggcggaagggagg |
51322812 |
T |
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| Q |
118 |
ccgctttgagatgtttataaaaatggataagggtaggggtaggatgtagaatcacatgttaatgcctcgtttgataaaactgccaaacaagttgcgtgt |
216 |
Q |
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| T |
51322813 |
ccgctttgagatgtttataaaaatggataagggtaggggtaggatgtagaatcacatcttaatgccacatttgataaaactgccaaacaagttgcgtgt |
51322911 |
T |
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