View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10276_low_6 (Length: 238)

Name: NF10276_low_6
Description: NF10276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10276_low_6
NF10276_low_6
[»] chr7 (15 HSPs)
chr7 (1-223)||(19779541-19779763)
chr7 (1-223)||(19887620-19887842)
chr7 (58-211)||(19357861-19358014)
chr7 (71-214)||(19351048-19351191)
chr7 (92-216)||(19721967-19722088)
chr7 (89-210)||(19344572-19344693)
chr7 (89-160)||(24002201-24002272)
chr7 (108-162)||(26256775-26256829)
chr7 (78-133)||(14076707-14076762)
chr7 (78-133)||(14386735-14386790)
chr7 (90-173)||(22028617-22028700)
chr7 (108-195)||(23993502-23993589)
chr7 (89-160)||(24010385-24010456)
chr7 (108-161)||(26217968-26218021)
chr7 (78-162)||(29454089-29454173)
[»] chr3 (2 HSPs)
chr3 (2-220)||(32578772-32578993)
chr3 (1-216)||(12734699-12734914)
[»] scaffold0464 (1 HSPs)
scaffold0464 (1-216)||(8007-8222)
[»] chr6 (2 HSPs)
chr6 (74-205)||(14749354-14749485)
chr6 (78-133)||(17369693-17369748)
[»] chr2 (4 HSPs)
chr2 (66-216)||(18913531-18913681)
chr2 (66-216)||(18908783-18908933)
chr2 (59-216)||(18920732-18920889)
chr2 (54-133)||(22051711-22051790)
[»] chr5 (2 HSPs)
chr5 (90-190)||(29597550-29597650)
chr5 (89-121)||(29642400-29642432)
[»] chr4 (1 HSPs)
chr4 (89-133)||(53774869-53774913)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 19779763 - 19779541
Alignment:
Q  1 tgtcactctcagaaaggtacaatggatacaaatacaattgagaaccataacccagtgaatcactgatgccataatcaatttgaaggtcctgaaaactaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19779763 tgtcactctcagaaaggtacaatggatacaaatacaattgagaaccataatccagtgaatcactaatgccataatcaatttgaaggtcctgaaaactaat 19779664  T
Q  101 tttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttggaacggtgagaaaaacatagacaatcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19779663 tttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttggaacggtgagaaaaacatagacaatcc 19779564  T
Q  201 atcaatacagtaacagctggatc 223  Q
    |||||||||||||||||||||||    
T  19779563 atcaatacagtaacagctggatc 19779541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 19887620 - 19887842
Alignment:
Q  1 tgtcactctcagaaaggtacaatggatacaaatacaattgagaaccataacccagtgaatcactgatgccataatcaatttgaaggtcctgaaaactaat 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19887620 tgtcactctcagaaaggtaaaatggatacaaatacaattgagaaccatagtccagtgaatcactaatgccataatcaatttgaaggtcctgaaaactaat 19887719  T
Q  101 tttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttggaacggtgagaaaaacatagacaatcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19887720 tttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttggaacggtgagaaaaacatagacaatcc 19887819  T
Q  201 atcaatacagtaacagctggatc 223  Q
    |||||||||||||||||||||||    
T  19887820 atcaatacagtaacagctggatc 19887842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 58 - 211
Target Start/End: Complemental strand, 19358014 - 19357861
Alignment:
Q  58 aatcactgatgccataatcaatttgaaggtcctgaaaactaattttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaac 157  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |||||||||||  | |||||||||  |||||||||    
T  19358014 aatcactactgccataatcaatttgaagatcctgaaaactaatttttaagaattgagtccaagactcttgaactccaaattccatcatcttccataaaac 19357915  T
Q  158 aaaatgggtctccttggaacggtgagaaaaacatagacaatccatcaatacagt 211  Q
     ||||||||| | ||| ||  ||||||||||||||||| |||||||||||||||    
T  19357914 gaaatgggtccctttgaaatagtgagaaaaacatagactatccatcaatacagt 19357861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 19351048 - 19351191
Alignment:
Q  71 ataatcaatttgaaggtcctgaaaactaattttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctcc 170  Q
    ||||||||| ||||| |||||||||||||||||||||||| |||||||||| || | ||||||  | |||||||||  |||||||||||||||||||       
T  19351048 ataatcaatgtgaagatcctgaaaactaattttgaggaatggagtccaagactcctcaactccaaattccatcatctgccataaaacaaaatgggtcctt 19351147  T
Q  171 ttggaacggtgagaaaaacatagacaatccatcaatacagtaac 214  Q
    |||  |  ||||||||||||||||||||||||||||||||||||    
T  19351148 ttgagattgtgagaaaaacatagacaatccatcaatacagtaac 19351191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 19722088 - 19721967
Alignment:
Q  92 aaaactaattttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttggaacggtgagaaaaacat 191  Q
    |||||| ||||||||||||||||||||||| |||||||||||  | |||||||||  ||||||||||||||      |||   ||| |||||||||||||    
T  19722088 aaaactgattttgaggaattgagtccaagaatcttgaactccaaattccatcatcttccataaaacaaaat---aaccctgaaaactgtgagaaaaacat 19721992  T
Q  192 agacaatccatcaatacagtaacag 216  Q
    ||||| |||||||||||||||||||    
T  19721991 agacagtccatcaatacagtaacag 19721967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 19344572 - 19344693
Alignment:
Q  89 ctgaaaactaattttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttggaacggtgagaaaaa 188  Q
    ||||||||||||||| || |||||||||||||| | || ||||||  | |||||||||  ||||| ||||||||| || | ||||  |  ||||||||||    
T  19344572 ctgaaaactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaaatgagtgttcttgagattgtgagaaaaa 19344671  T
Q  189 catagacaatccatcaatacag 210  Q
    || || || |||||||||||||    
T  19344672 caaaggcagtccatcaatacag 19344693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 24002272 - 24002201
Alignment:
Q  89 ctgaaaactaattttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaa 160  Q
    |||| ||||||| || || |||||||||||||| |||||||||||||||||| ||||   ||||||||||||    
T  24002272 ctgataactaatcttaagtaattgagtccaagactcttgaactccgtactccttcatatgccataaaacaaa 24002201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 26256829 - 26256775
Alignment:
Q  108 aattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaat 162  Q
    |||||||||||||| ||||||||||| |||||| |||||  ||||||||||||||    
T  26256829 aattgagtccaagactcttgaactccatactccttcatctgccataaaacaaaat 26256775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 14076762 - 14076707
Alignment:
Q  78 atttgaaggtcctgaaaactaattttgaggaattgagtccaagagtcttgaactcc 133  Q
    |||||||| | |||| |||||||||| || ||||||||||||||||||| ||||||    
T  14076762 atttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactcc 14076707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 14386790 - 14386735
Alignment:
Q  78 atttgaaggtcctgaaaactaattttgaggaattgagtccaagagtcttgaactcc 133  Q
    |||||||| | |||| |||||||||| || ||||||||||||||||||| ||||||    
T  14386790 atttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactcc 14386735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 22028700 - 22028617
Alignment:
Q  90 tgaaaactaattttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttg 173  Q
    ||||||||||| || || |||||||||||||| |||| |||||| || ||| ||||   ||||| |||||||||||| ||||||    
T  22028700 tgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttg 22028617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 23993589 - 23993502
Alignment:
Q  108 aattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttggaacggtgagaaaaacatagac 195  Q
    |||||||||||||| |||||||| ||||||||| ||||   |||||||||||| |  || || ||||||  |||||||||||| ||||    
T  23993589 aattgagtccaagactcttgaaccccgtactccttcatatgccataaaacaaattcagtttcattggaatcgtgagaaaaacagagac 23993502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 24010456 - 24010385
Alignment:
Q  89 ctgaaaactaattttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaa 160  Q
    |||| ||||||| || || |||||||||||||| |||||||| ||||||||| ||||   ||||||||||||    
T  24010456 ctgataactaatcttaagtaattgagtccaagactcttgaaccccgtactccttcatatgccataaaacaaa 24010385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 26218021 - 26217968
Alignment:
Q  108 aattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaa 161  Q
    ||||||| |||||| ||||||||||| |||||| |||||  |||||||||||||    
T  26218021 aattgagaccaagactcttgaactccatactccttcatctgccataaaacaaaa 26217968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 29454089 - 29454173
Alignment:
Q  78 atttgaaggtcctgaaaactaattttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaat 162  Q
    |||||||| || ||| |||||||||| | ||||||||||||||| |||| ||||||  | | |||||||  ||||| ||||||||    
T  29454089 atttgaagatcttgataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaat 29454173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 32578772 - 32578993
Alignment:
Q  2 gtcactctcagaaaggtacaatggatacaaatacaattgagaaccataac---ccagtgaatcactgatgccataatcaatttgaaggtcctgaaaacta 98  Q
    ||||||||| ||||||||||||||||||||  ||||||||||||||| |    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  32578772 gtcactctcggaaaggtacaatggatacaagaacaattgagaaccatcatattccagtgaatcactaatgccataatcaatttgaaggtcctgaaaacta 32578871  T
Q  99 attttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttggaacggtgagaaaaacatagacaat 198  Q
    || |||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32578872 atcttgaggaattgagtccaagactcgtgaactccgtactccatcatcatccataaaacaaaatgggtctccttgaaacggtgagaaaaacatagacaat 32578971  T
Q  199 ccatcaatacagtaacagctgg 220  Q
    ||||||| ||||||||||||||    
T  32578972 ccatcaacacagtaacagctgg 32578993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 12734699 - 12734914
Alignment:
Q  1 tgtcactctcagaaaggtacaatggatacaaatacaattgagaaccataacccagtgaatcactgatgccataatcaatttgaaggtcctgaaaactaat 100  Q
    |||||||||||||||||||||| ||| ||||  ||||||||||||||||  ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  12734699 tgtcactctcagaaaggtacaacggaaacaagaacaattgagaaccatattccagtaaatcactgatgccataatcaatttgaagatcctgaaaactaat 12734798  T
Q  101 tttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttggaacggtgagaaaaacatagacaatcc 200  Q
    |||||| |||||| ||||||| |||||||||||| | |||| ||||| ||||||||||||||||||  ||||| ||||||||||||||||||||| ||||    
T  12734799 tttgagaaattgaatccaagaatcttgaactccgaattccaacatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgatcc 12734898  T
Q  201 atcaatacagtaacag 216  Q
    ||||||||||||||||    
T  12734899 atcaatacagtaacag 12734914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 8222 - 8007
Alignment:
Q  1 tgtcactctcagaaaggtacaatggatacaaatacaattgagaaccataacccagtgaatcactgatgccataatcaatttgaaggtcctgaaaactaat 100  Q
    ||||||||||||| |||||||| ||| ||||  ||||||||||||||||  | ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  8222 tgtcactctcagagaggtacaacggaaacaagaacaattgagaaccatactctagtgaatcactaatgccataatcaatttgaagatcctgaaaactaat 8123  T
Q  101 tttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttggaacggtgagaaaaacatagacaatcc 200  Q
    |||||| |||||| ||||||| |||||||||||| | |||||||||| ||||||||||||||||||  ||||| ||||||||||||||||||||| || |    
T  8122 tttgagaaattgaatccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattc 8023  T
Q  201 atcaatacagtaacag 216  Q
    ||||||||||||||||    
T  8022 atcaatacagtaacag 8007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 14749485 - 14749354
Alignment:
Q  74 atcaatttgaaggtcctgaaaactaattttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttg 173  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||  | |||||||||  ||||||||||||||||||||| |||    
T  14749485 atcaatttgaaggtcctgaaggctaattttgaggaattgagtccaagactcttgaactccaaattccatcatcctccataaaacaaaatgggtctctttg 14749386  T
Q  174 gaacggtgagaaaaacatagacaatccatcaa 205  Q
     |||||||||||||||||||||||||||||||    
T  14749385 aaacggtgagaaaaacatagacaatccatcaa 14749354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 17369748 - 17369693
Alignment:
Q  78 atttgaaggtcctgaaaactaattttgaggaattgagtccaagagtcttgaactcc 133  Q
    |||||||| | |||| |||||||||| || ||||||||||||||||||| ||||||    
T  17369748 atttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactcc 17369693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 18913531 - 18913681
Alignment:
Q  66 atgccataatcaatttgaaggtcctgaaaactaattttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatggg 165  Q
    |||||||||||||| ||||| |  |||||||||||||||||||||||||||||||| |||||||||||  | |||||||||  ||||| |||||||||||    
T  18913531 atgccataatcaatatgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatggg 18913630  T
Q  166 tctccttggaacggtgagaaaaacatagacaatccatcaatacagtaacag 216  Q
    |  || || ||||||||||||||||||||||||||||||| ||| ||||||    
T  18913631 ttcccctgaaacggtgagaaaaacatagacaatccatcaacacactaacag 18913681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 18908783 - 18908933
Alignment:
Q  66 atgccataatcaatttgaaggtcctgaaaactaattttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatggg 165  Q
    |||||||||||||| ||||| |  |||||||||||||||||||||||||||||||| |||||||||||  | |||||||||  ||||| |||||||||||    
T  18908783 atgccataatcaatatgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatggg 18908882  T
Q  166 tctccttggaacggtgagaaaaacatagacaatccatcaatacagtaacag 216  Q
    | ||  |  ||||||||||||||||||||||||||||||| ||| ||||||    
T  18908883 tttctctaaaacggtgagaaaaacatagacaatccatcaacacactaacag 18908933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 18920732 - 18920889
Alignment:
Q  59 atcactgatgccataatcaatttgaaggtcctgaaaactaattttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaaca 158  Q
    |||||| |||||||||||||| ||||| |  |||||||||||||||||||||||||||||||| |||||||||||  | |||||||||  ||||| ||||    
T  18920732 atcactaatgccataatcaatatgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataaca 18920831  T
Q  159 aaatgggtctccttggaacggtgagaaaaacatagacaatccatcaatacagtaacag 216  Q
    |||||||| ||  |  |||||||||||||||||| |||||||||||| ||| ||||||    
T  18920832 aaatgggtttctctaaaacggtgagaaaaacatatacaatccatcaacacactaacag 18920889  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 22051711 - 22051790
Alignment:
Q  54 agtgaatcactgatgccataatcaatttgaaggtcctgaaaactaattttgaggaattgagtccaagagtcttgaactcc 133  Q
    ||||||||||| ||  |||||||||||||||| | |||| ||||||||||||  |||||||||||| | |||||||||||    
T  22051711 agtgaatcactaataacataatcaatttgaagattctgataactaattttgaaaaattgagtccaatattcttgaactcc 22051790  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 29597550 - 29597650
Alignment:
Q  90 tgaaaactaattttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttggaacggtgagaaaaac 189  Q
    |||||||||||||| ||||||||||||||||| | || ||||||  | || |||||   ||||| ||||||||| || |||||| || ||||||||||||    
T  29597550 tgaaaactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagtttccttgaaatggtgagaaaaac 29597649  T
Q  190 a 190  Q
    |    
T  29597650 a 29597650  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 29642432 - 29642400
Alignment:
Q  89 ctgaaaactaattttgaggaattgagtccaaga 121  Q
    ||||||||||||||| |||||||||||||||||    
T  29642432 ctgaaaactaattttaaggaattgagtccaaga 29642400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 53774913 - 53774869
Alignment:
Q  89 ctgaaaactaattttgaggaattgagtccaagagtcttgaactcc 133  Q
    |||| |||||||||| ||||||||||||||||| |||| ||||||    
T  53774913 ctgataactaattttaaggaattgagtccaagactcttcaactcc 53774869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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