View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10276_low_7 (Length: 218)
Name: NF10276_low_7
Description: NF10276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10276_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 44669611 - 44669732
Alignment:
| Q |
36 |
atcgaataaaataaacaaatgtaagtcgtccaaatttatactaaaatgcttaga--attagttttttcctctctatgtattacaaaaatatcctttaaat |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44669611 |
atcgaataaaataaacaaatgtaagtcgtccaaatttatactaaaatgcttagactattagttttttcctctctatgtattacaaaaatatcctttaaat |
44669710 |
T |
|
| Q |
134 |
tacgtaatctggattctatttt |
155 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
44669711 |
tacgtaatctggattctatttt |
44669732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 36 - 186
Target Start/End: Original strand, 44688887 - 44689038
Alignment:
| Q |
36 |
atcgaataaaataaacaaatgtaagtcgtccaaatttatactaaaatgcttaga--attagttttttcctctctatgtattacaaaaatatcctttaaat |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || |||||| ||||||||||||||||||||||| |
|
|
| T |
44688887 |
atcgaataaaataaacaaatgtaagtcgtccaaatttatactaaaatgcttagactattaattttt-ccgctctatatattacaaaaatatcctttaaat |
44688985 |
T |
|
| Q |
134 |
tacgtaatctggattctattttcttgaaattctcggattatataatccgaata |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
44688986 |
tacgtaatctggattctattttcttgaaattcatggattatataatacgaata |
44689038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University