View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10277_high_1 (Length: 512)
Name: NF10277_high_1
Description: NF10277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10277_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 3626713 - 3626245
Alignment:
| Q |
1 |
catccatcatagggccaattcggctctgtaatgtcattagcttcacttgtactttttggcggccaaatacttcaaattcaagagatccagtgggagaagg |
100 |
Q |
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| T |
3626713 |
catccatcatagggccaattcggctctgtaatgtcattagcttcacttgtactttttggcggccaaatacttcaaattcaagagatccagtgggagaagg |
3626614 |
T |
|
| Q |
101 |
aacgataatacatacggtataaaccaatataatatactttacttctcaattttcacttcaacctttgcaaaattaatttatttaatgtatgcatgtttag |
200 |
Q |
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| T |
3626613 |
aacgataatacatacggtaaaaaccaatataatatactttacttctcaattttcacttcaacctttgcaaaattaatttatttaatgtatgcatgtttag |
3626514 |
T |
|
| Q |
201 |
attgacgataagattcacataatcatgatgtgctgtattgattttgttcaaagctaccttttggagcttcccggtaaaatcaccatgacaccatgatttt |
300 |
Q |
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| T |
3626513 |
attgatgataagattcacagaatcatgatgtgctgtattgattttgttcaaagctaccttttggagcttcccggtaaaatcacgatgacaccatgatttt |
3626414 |
T |
|
| Q |
301 |
gctgaattcatcgtcaatatcaataatatatgcttaatttaagttgttg-----------ttaatattttgaatcgcaatcatgtcaacattgcaatttt |
389 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3626413 |
gctgaattcatcgtcaatataaataatatatgcttaatttaagttgttgttaacttgttattaatattttgaatcgcaatcatgtcaacattgcaatttt |
3626314 |
T |
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| Q |
390 |
tgatataacacataatcatagtcagattcagttgttattaattgtgtcacatagtactctctctgtccc |
458 |
Q |
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| T |
3626313 |
tgatataacacataatcatagtcagattcagttgttattaattgtgtcacatagtactctctccgtccc |
3626245 |
T |
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