View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10277_high_5 (Length: 290)
Name: NF10277_high_5
Description: NF10277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10277_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 29036844 - 29037117
Alignment:
| Q |
1 |
agcatagggaatatattgattatacatggcatcaatggaagacatcaacatgtgtactgagcaaattacacttccaggattcagatttcaccccacagaa |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29036844 |
agcatagagaatatattgattatacatggcatcaatggaagacatcaacatgtgtactgagcaaattacacttccaggattcagatttcaccccacagaa |
29036943 |
T |
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| Q |
101 |
gaagaactccttgatttctatcttaaaaatatggttgttggcaaaaaacttcgttatgatgtcattggttttctcaatatctatcaccatgatccttgtg |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29036944 |
gaagaactccttgatttctatcttaagaatatggttgttggcaaaaaacttcgttatgatgtcattggttttctcaatatctatcaccatgatccttgtg |
29037043 |
T |
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| Q |
201 |
acttgccaggtatattactaatcaatcaattgctagtaccatattatgtgttagtgttacatattttcgtaaac |
274 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29037044 |
acttgccaggtatattgctaatcaatcaattgctagtaccatattatgtgttagtgttacatattttcgtaaac |
29037117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 29048980 - 29049253
Alignment:
| Q |
1 |
agcatagggaatatattgattatacatggcatcaatggaagacatcaacatgtgtactgagcaaattacacttccaggattcagatttcaccccacagaa |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29048980 |
agcatagagaatatattgattatacatggcatcaatggaagacatcaacatgtgtactgagcaaattacacttccaggattcagatttcaccccacagaa |
29049079 |
T |
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| Q |
101 |
gaagaactccttgatttctatcttaaaaatatggttgttggcaaaaaacttcgttatgatgtcattggttttctcaatatctatcaccatgatccttgtg |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29049080 |
gaagaactccttgatttctatcttaagaatatggttgttggcaaaaaacttcgttatgatgtcattggttttctcaatatctatcaccatgatccttgtg |
29049179 |
T |
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| Q |
201 |
acttgccaggtatattactaatcaatcaattgctagtaccatattatgtgttagtgttacatattttcgtaaac |
274 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29049180 |
acttgccaggtatattgctaatcaatcaattgctagtaccatattatgtgttagtgttacatattttcgtaaac |
29049253 |
T |
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