View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10277_low_3 (Length: 456)

Name: NF10277_low_3
Description: NF10277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10277_low_3
NF10277_low_3
[»] chr4 (2 HSPs)
chr4 (17-444)||(31151429-31151856)
chr4 (99-151)||(29011514-29011566)
[»] chr7 (1 HSPs)
chr7 (89-213)||(29428856-29428980)
[»] chr8 (2 HSPs)
chr8 (89-213)||(20989654-20989778)
chr8 (108-150)||(38679751-38679793)
[»] chr6 (1 HSPs)
chr6 (89-155)||(19694618-19694684)
[»] chr3 (4 HSPs)
chr3 (53-151)||(17575753-17575851)
chr3 (98-155)||(11414563-11414620)
chr3 (107-151)||(40026108-40026152)
chr3 (89-150)||(35231873-35231934)
[»] chr1 (3 HSPs)
chr1 (89-152)||(23473767-23473830)
chr1 (80-163)||(50109050-50109133)
chr1 (89-150)||(35306817-35306878)
[»] scaffold0011 (1 HSPs)
scaffold0011 (89-207)||(9278-9396)
[»] chr5 (2 HSPs)
chr5 (89-146)||(15021740-15021797)
chr5 (51-151)||(32233012-32233112)


Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Complemental strand, 31151856 - 31151429
Alignment:
Q  17 aattatgagactctattccgatacaccccgcattgagggaataaaaaattgatggaatgtgtaatatcggacggaatgaattccattatgttccattcca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31151856 aattatgagactctattccgatacaccccgcattgagggaataaaaaattgatggaatgtgtaatatcggacggaatggattccattatgttccattcca 31151757  T
Q  117 ttctattcattttttacaaatttaaacaatggaatttaacttcataccacttcactgcattccattctatcatattccaacaattcaaacaatgcctagc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151756 ttctattcattttttacaaatttaaacaatggaatttaacttcataccacttcactgcattccattctatcatattccaacaattcaaacaatgcctagc 31151657  T
Q  217 agaacagattttgaaacagcccaggctaataattccaaaagtattttacacgtattcattcattgaacctgcaacttgtgtgagagtgaaaatgatgtat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151656 agaacagattttgaaacagcccaggctaataattccaaaagtattttacacgtattcattcattgaacctgcaacttgtgtgagagtgaaaatgatgtat 31151557  T
Q  317 ttttgtatttaattgggtgagtggggtatattgatatttgttcattggtcattactcaccttgcttgttttactttataaattatacatttcataggttg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151556 ttttgtatttaattgggtgagtggggtatattgatatttgttcattggtcattactcaccttgcttgttttactttataaattatacatttcataggttg 31151457  T
Q  417 ttaggtcctatctaccacctctatcctt 444  Q
    ||||||||||||||||||||||||||||    
T  31151456 ttaggtcctatctaccacctctatcctt 31151429  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 29011566 - 29011514
Alignment:
Q  99 ccattatgttccattccattctattcattttttacaaatttaaacaatggaat 151  Q
    |||| ||||||||| |||||| |||||||||||  ||||| ||||||||||||    
T  29011566 ccatcatgttccatcccattccattcatttttttaaaattcaaacaatggaat 29011514  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 29428980 - 29428856
Alignment:
Q  89 ggaatgaattccattatgttccattccattctattcattttttacaaatttaaacaatggaatttaacttcataccacttcactgcattccattctatca 188  Q
    |||||| ||||||| ||||| |||||||||| |||||||||||||||||  |||||||||||  ||||| |||||||||||| | ||| | |||| ||||    
T  29428980 ggaatggattccatcatgtttcattccattccattcattttttacaaatccaaacaatggaacataactccataccacttcattccatcctattccatca 29428881  T
Q  189 tattccaacaattcaaacaatgcct 213  Q
    | ||||| |||| ||||||| ||||    
T  29428880 tgttccaccaatccaaacaaagcct 29428856  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 20989778 - 20989654
Alignment:
Q  89 ggaatgaattccattatgttccattccattctattcattttttacaaatttaaacaatggaatttaacttcataccacttcactgcattccattctatca 188  Q
    |||||| |||||||  ||||||||||||||| |||||||||||| |||  ||||||||||||  ||||   || |||| ||| | ||||| |||| ||||    
T  20989778 ggaatggattccatcttgttccattccattccattcattttttataaacctaaacaatggaacataacaatattccacctcattccattctattccatca 20989679  T
Q  189 tattccaacaattcaaacaatgcct 213  Q
    ||||||| |||| ||||||| ||||    
T  20989678 tattccatcaatccaaacaaagcct 20989654  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 38679793 - 38679751
Alignment:
Q  108 tccattccattctattcattttttacaaatttaaacaatggaa 150  Q
    |||||||||||||||||||||||||||||   |||||||||||    
T  38679793 tccattccattctattcattttttacaaaaccaaacaatggaa 38679751  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 19694618 - 19694684
Alignment:
Q  89 ggaatgaattccattatgttccattccattctattcattttttacaaatttaaacaatggaatttaa 155  Q
    |||||| |||||||||||||||||||| ||| ||| ||||||| |||||  ||||||||||||||||    
T  19694618 ggaatggattccattatgttccattcccttccattaattttttgcaaatccaaacaatggaatttaa 19694684  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 53 - 151
Target Start/End: Complemental strand, 17575851 - 17575753
Alignment:
Q  53 gggaataaaaaattgatggaatgtgtaatatcggacggaatgaattccattatgttccattccattctattcattttttacaaatttaaacaatggaat 151  Q
    |||||| ||||||||| ||| || || ||||  || ||||||||||||||||||||||||| ||   |||| |||||||||||||| ||||||| ||||    
T  17575851 gggaatgaaaaattgaaggattgagtgatatgagatggaatgaattccattatgttccatttcacattattgattttttacaaattcaaacaatagaat 17575753  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 11414620 - 11414563
Alignment:
Q  98 tccattatgttccattccattctattcattttttacaaatttaaacaatggaatttaa 155  Q
    |||||||||||||||||||||||||||| | |||||||||  ||||||| ||||||||    
T  11414620 tccattatgttccattccattctattcactatttacaaatccaaacaatagaatttaa 11414563  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 40026108 - 40026152
Alignment:
Q  107 ttccattccattctattcattttttacaaatttaaacaatggaat 151  Q
    |||||||||||||||||||||||||||||| | ||||||||||||    
T  40026108 ttccattccattctattcattttttacaaaatcaaacaatggaat 40026152  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 35231873 - 35231934
Alignment:
Q  89 ggaatgaattccattatgttccattccattctattcattttttacaaatttaaacaatggaa 150  Q
    |||||| ||||||| ||||||||| |||||| || || |||||| |||| ||||||||||||    
T  35231873 ggaatggattccatcatgttccataccattccatccaatttttagaaatctaaacaatggaa 35231934  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 23473830 - 23473767
Alignment:
Q  89 ggaatgaattccattatgttccattccattctattcattttttacaaatttaaacaatggaatt 152  Q
    |||||| ||||||| |||||||||||||||| ||||| |||||||| ||  |||||||||||||    
T  23473830 ggaatggattccatcatgttccattccattccattcaatttttacacatccaaacaatggaatt 23473767  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 50109050 - 50109133
Alignment:
Q  80 atatcggacggaatgaattccattatgttccattccattctattcattttttacaaatttaaacaatggaatttaacttcatac 163  Q
    |||| ||| |||||| ||||||| ||||||||||||| || |||||||| ||||||||  |||||||||||  ||||| |||||    
T  50109050 atatgggatggaatggattccatcatgttccattccactccattcatttcttacaaatccaaacaatggaacataactccatac 50109133  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 35306817 - 35306878
Alignment:
Q  89 ggaatgaattccattatgttccattccattctattcattttttacaaatttaaacaatggaa 150  Q
    |||||| ||||||| ||||||||| |||||| || || |||||| |||| ||||||||||||    
T  35306817 ggaatggattccatcatgttccataccattccatccaatttttagaaatctaaacaatggaa 35306878  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 207
Target Start/End: Original strand, 9278 - 9396
Alignment:
Q  89 ggaatgaattccattatgttccattccattctattcattttttacaaatttaaacaatggaatttaacttcataccacttcactgcattccattctatca 188  Q
    |||||| ||||||| || ||| |||||| || ||| |  ||||||||||| |||||||||||| | | | ||| ||||| || | |||||||||| ||||    
T  9278 ggaatggattccatcatattcaattccactccattaaaattttacaaattcaaacaatggaatatgattccatcccactccattccattccattccatca 9377  T
Q  189 tattccaacaattcaaaca 207  Q
     |||||| |||| ||||||    
T  9378 cattccatcaatccaaaca 9396  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 15021797 - 15021740
Alignment:
Q  89 ggaatgaattccattatgttccattccattctattcattttttacaaatttaaacaat 146  Q
    ||||||||||||||| |||||||| |||||  |||||||||| ||||||  |||||||    
T  15021797 ggaatgaattccattgtgttccataccatttcattcatttttaacaaatcaaaacaat 15021740  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 32233112 - 32233012
Alignment:
Q  51 gagggaataaaaaattgatggaatgtgtaatatcggacggaatgaattccattatgttccattccattctattcattttttacaaatttaaacaatggaa 150  Q
    |||||||| ||||||||| ||  || ||  ||| ||| ||||||| ||||||| | |||||||||| || ||||| ||||| |||||  |||||||||||    
T  32233112 gagggaatgaaaaattgaaggtttgggtggtattggatggaatgagttccattgtattccattccactccattcactttttgcaaatccaaacaatggaa 32233013  T
Q  151 t 151  Q
    |    
T  32233012 t 32233012  T

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