View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10277_low_4 (Length: 447)
Name: NF10277_low_4
Description: NF10277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10277_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 193 - 431
Target Start/End: Original strand, 10356619 - 10356857
Alignment:
| Q |
193 |
tattttatacttgaaaattgagannnnnnngatcaacttgaaaaattgagatgagtattcactaattttaagtatgaaatgtgtcatgattttttaaata |
292 |
Q |
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| T |
10356619 |
tattttatacttgaaaattgagatttttttgatcaacttgaaaaattgagatgagtattcactaattttaagtatgaaatgtgtcatgattttttaaata |
10356718 |
T |
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| Q |
293 |
attcaagtatgaaatgtgtcataattatttttaatgtagaccagatcaacaatcatatgatttcgctaataatatataggttcaataagtgaacaattgt |
392 |
Q |
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| T |
10356719 |
attcaagtatgaaatgtgtcataattatttttaatgtagaccagatcaacaattatatgatttcgctaaaaatatttaggttcaataagtgaacaattgt |
10356818 |
T |
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| Q |
393 |
tttgtctaggtttgaattcaggacctctaactcattatc |
431 |
Q |
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| T |
10356819 |
tttgtctaggtttgaatttgggacctctaactaattatc |
10356857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 10356084 - 10356241
Alignment:
| Q |
11 |
cataggcctcttgaaaactttggggcaaaaattgtccaatctcagtgcccattttaaaacttagtgttcttaattccttaatttagtccctataaaagaa |
110 |
Q |
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| T |
10356084 |
cataggcctcttgaaaactttggggcaaaaattgtccaatctcagtgcccattttaaaacttagtgttcttaattccttaatttagtccctattaaagca |
10356183 |
T |
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| Q |
111 |
aaaatgaataaaatt-ggcaaactttatgcagatactaaacatgagaaattaatttta |
167 |
Q |
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| T |
10356184 |
aaattgaataaaattgggcaaactttatgcagatactaaacatgagaaattaatttta |
10356241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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