View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10277_low_7 (Length: 280)
Name: NF10277_low_7
Description: NF10277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10277_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 46 - 265
Target Start/End: Complemental strand, 49351234 - 49351003
Alignment:
| Q |
46 |
tttggtatgtgaatgagaatgcaaaagtgaaagcaatcagataaagcacttcggaggaaaaaggtggaagaagataagagcaaggaagaatgaactaata |
145 |
Q |
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| T |
49351234 |
tttggtatgggaatgaaaaagcaaaagtgaaagcaatcagataaagcacttcggaggaaaaaggtggaagaagataagagcaaggaagaatgaactaata |
49351135 |
T |
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| Q |
146 |
cagtgtccaatcaatgattagcaatcat------------tcnnnnnnncttttctttcagaccagctattatactaagtgtgtgtttgatttgatcagc |
233 |
Q |
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| T |
49351134 |
cagtgtccaatcaatgattagcaatcattatttttttttgtttttttgttttttctttcagaccagctattatactaagtgtgtgtttgatttgatcagc |
49351035 |
T |
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| Q |
234 |
taaatagattttatatgtaacttgcataaatt |
265 |
Q |
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| T |
49351034 |
taaatagattttatatgtaacttgcataaatt |
49351003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 49351305 - 49351241
Alignment:
| Q |
29 |
acgtaggagcttctaaatttggtatgtgaatgagaatgcaaaagtgaaagcaatcagataaagca |
93 |
Q |
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| T |
49351305 |
acgtaggagcttctaaatttggtatgtgaatgagaatgcaaaagtgaaaccaatcaggtaaagca |
49351241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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