View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10277_low_8 (Length: 268)

Name: NF10277_low_8
Description: NF10277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10277_low_8
NF10277_low_8
[»] chr7 (6 HSPs)
chr7 (1-254)||(8456805-8457056)
chr7 (111-240)||(18815126-18815260)
chr7 (200-246)||(40682095-40682141)
chr7 (214-254)||(27987393-27987433)
chr7 (201-246)||(28173808-28173853)
chr7 (197-229)||(4077555-4077587)
[»] chr1 (12 HSPs)
chr1 (111-254)||(26996319-26996460)
chr1 (119-206)||(24542467-24542555)
chr1 (198-254)||(24544868-24544924)
chr1 (145-246)||(48710360-48710461)
chr1 (111-254)||(28520561-28520704)
chr1 (162-242)||(29555239-29555319)
chr1 (188-246)||(26805224-26805282)
chr1 (200-246)||(48611408-48611454)
chr1 (197-246)||(17708242-17708291)
chr1 (197-246)||(30110753-30110802)
chr1 (197-246)||(33136772-33136821)
chr1 (195-244)||(33743291-33743340)
[»] scaffold0289 (1 HSPs)
scaffold0289 (122-251)||(11424-11553)
[»] chr4 (10 HSPs)
chr4 (136-254)||(25135660-25135778)
chr4 (145-246)||(10349381-10349482)
chr4 (201-246)||(13026927-13026972)
chr4 (201-246)||(18921305-18921350)
chr4 (195-244)||(40305232-40305281)
chr4 (204-246)||(25913318-25913360)
chr4 (197-246)||(18106384-18106433)
chr4 (197-246)||(34322147-34322196)
chr4 (197-246)||(42778501-42778550)
chr4 (197-246)||(53486781-53486830)
[»] chr3 (3 HSPs)
chr3 (145-246)||(48352094-48352195)
chr3 (197-246)||(47537531-47537580)
chr3 (197-246)||(48192062-48192111)
[»] chr5 (7 HSPs)
chr5 (145-246)||(22113895-22113996)
chr5 (200-246)||(42457097-42457143)
chr5 (183-246)||(19315620-19315683)
chr5 (201-246)||(27515878-27515923)
chr5 (191-244)||(42918009-42918062)
chr5 (197-246)||(4415528-4415577)
chr5 (189-246)||(4926190-4926247)
[»] chr2 (6 HSPs)
chr2 (150-246)||(43408352-43408447)
chr2 (183-246)||(1998354-1998417)
chr2 (207-246)||(9584069-9584108)
chr2 (188-246)||(42474413-42474471)
chr2 (197-246)||(1380345-1380394)
chr2 (197-246)||(2999576-2999625)
[»] chr8 (5 HSPs)
chr8 (145-244)||(18182647-18182746)
chr8 (204-246)||(45255664-45255706)
chr8 (197-246)||(17659094-17659143)
chr8 (198-246)||(29681621-29681669)
chr8 (202-246)||(31687088-31687132)
[»] scaffold0225 (1 HSPs)
scaffold0225 (189-246)||(5886-5943)
[»] chr6 (5 HSPs)
chr6 (149-246)||(7579286-7579383)
chr6 (129-244)||(7218091-7218206)
chr6 (197-246)||(649894-649943)
chr6 (197-246)||(9199080-9199129)
chr6 (150-246)||(23660420-23660516)
[»] scaffold0134 (1 HSPs)
scaffold0134 (200-246)||(41667-41713)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 8456805 - 8457056
Alignment:
Q  1 gataatgagattcgaaatcatctttatgtgacatgagttcaatatatttagcgataggaccaacctgtgttcatcacacctccctatgttcctaattttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8456805 gataatgagattcgaaatcatctttatgtgacatgagttcaatatatttagcgataggaccaacctgtgttcatcacacctccctatgttcctaatttta 8456904  T
Q  101 gtccataaaattagctacgtcttatgcaagacttgttgagttatcggaaaataaactagctacggtgtcggagatgtttactttagattggggggtgggt 200  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8456905 gtccatgaaattagctacgtcttatgcaagactttttgagttatcgtaaaataaactagctacggtgtcagagatgtttactttagattggggggtgggt 8457004  T
Q  201 ggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggaggttttggtg 254  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  8457005 ggtgaggcgtggaagtggaggaggaggttattt--gtgggaggaggttttggtg 8457056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 18815126 - 18815260
Alignment:
Q  111 ttagctacgtcttatgcaagacttgttgagttatcggaaa-----ataaactagctacggtgtcggagatgtttactttagattggggggtgggtggtga 205  Q
    ||||| |||||||||||||||||| |||||||||||||||     | |||||||||||  | |||||||||||| |||||| ||||| ||  ||||||||    
T  18815126 ttagcaacgtcttatgcaagactttttgagttatcggaaagaaaaaaaaactagctacaatatcggagatgtttgctttaggttgggaggatggtggtga 18815225  T
Q  206 ggcgtggaagtggaggaggaggttatttgcgtggg 240  Q
    |||||||||||||||||||||||||||| ||||||    
T  18815226 ggcgtggaagtggaggaggaggttattttcgtggg 18815260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 40682095 - 40682141
Alignment:
Q  200 tggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  40682095 tggtgaggcgtggaagtggaggaggaggttgtttgcatgggaggagg 40682141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 27987393 - 27987433
Alignment:
Q  214 agtggaggaggaggttatttgcgtgggaggaggttttggtg 254  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  27987393 agtggaggatgaggttatttgcgtgggatgaggttttggtg 27987433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 28173808 - 28173853
Alignment:
Q  201 ggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||||||||||||||||||||||| || |  |||||||||||||    
T  28173808 ggtgaggcgtggaagtggaggaggagattgtgggcgtgggaggagg 28173853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 4077587 - 4077555
Alignment:
Q  197 gggtggtgaggcgtggaagtggaggaggaggtt 229  Q
    |||||| ||||||||||||||||||||||||||    
T  4077587 gggtggggaggcgtggaagtggaggaggaggtt 4077555  T

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Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 111 - 254
Target Start/End: Complemental strand, 26996460 - 26996319
Alignment:
Q  111 ttagctacgtcttatgcaagacttgttgagttatcggaaaataaactagctacggtgtcggagatgtttactttagattggggggtgggtggtgaggcgt 210  Q
    ||||| |||||||||| |||||||  |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||    
T  26996460 ttagcaacgtcttatgtaagactt--tgagttatcgaaaaataaactagctacggtgtcggagatgtttgctttagattggggagtgggtggtgaggtgt 26996363  T
Q  211 ggaagtggaggaggaggttatttgcgtgggaggaggttttggtg 254  Q
    ||||||||||| |||||||||||||||||||||||| |||||||    
T  26996362 ggaagtggaggcggaggttatttgcgtgggaggaggctttggtg 26996319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 24542467 - 24542555
Alignment:
Q  119 gtcttatgcaagacttgttgagttatcggaaaataaactagctacggtgtcggagatgtttactttagattgggg-ggtgggtggtgag 206  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||    
T  24542467 gtcttatgcaagactttttgagttatcggaaaataaactagctacggtgttggagatgtttgctttagattggggaggtgggtggtgag 24542555  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 24544868 - 24544924
Alignment:
Q  198 ggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggaggttttggtg 254  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  24544868 ggtggtgaggcgtggaagtggaggaggaggttatttgtgtggggggaggttttggtg 24544924  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 48710461 - 48710360
Alignment:
Q  145 cggaaaataaactagctacggtgtcggagatgtttactttagattggggggtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggagga 244  Q
    |||| |||||||||||||||||||| ||||||| |   ||||  |||||||  || ||||| |||||||||||| | |||||||||||||||||||||||    
T  48710461 cggacaataaactagctacggtgtcagagatgtgtgagttagggtggggggctggaggtgaagcgtggaagtggcgtaggaggttatttgcgtgggagga 48710362  T
Q  245 gg 246  Q
    ||    
T  48710361 gg 48710360  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 254
Target Start/End: Original strand, 28520561 - 28520704
Alignment:
Q  111 ttagctacgtcttatgcaagacttgttgagttatcggaaaataaactagctacggtgtcggagatgtttactttagattggggggtgggtggtgaggcgt 210  Q
    ||||| ||||||||||| || ||  |||||||| ||||||||||||| |  ||||||  ||||||||||   ||||  |  || || | ||| |||||||    
T  28520561 ttagcaacgtcttatgctaggctatttgagttaacggaaaataaacttgtcacggtgatggagatgtttgtattagggtatggagttgatggagaggcgt 28520660  T
Q  211 ggaagtggaggaggaggttatttgcgtgggaggaggttttggtg 254  Q
    |||||||||||||||| ||||||||||||||||| | |||||||    
T  28520661 ggaagtggaggaggagattatttgcgtgggaggaaggtttggtg 28520704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 29555319 - 29555239
Alignment:
Q  162 acggtgtcggagatgtttactttagattggggggtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggag 242  Q
    |||||| |||||||||||||||| |  ||||  |||  ||| ||||| ||||||||| | |||||||||||||||||||||    
T  29555319 acggtggcggagatgtttactttggggtgggatgtgaatggcgaggcttggaagtggtgtaggaggttatttgcgtgggag 29555239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 26805282 - 26805224
Alignment:
Q  188 ttggggggtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    ||||| ||| |||||||||||||||| |||||||||||| || |  |||||||||||||    
T  26805282 ttgggaggtaggtggtgaggcgtggaggtggaggaggagattgtgggcgtgggaggagg 26805224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 48611454 - 48611408
Alignment:
Q  200 tggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||||||||||| ||||||| ||||||| || |||||||||||||    
T  48611454 tggtgaggcgtggacgtggaggcggaggttgttcgcgtgggaggagg 48611408  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 17708291 - 17708242
Alignment:
Q  197 gggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||| |||||||||||||||||||||||||| |  || ||||||||||    
T  17708291 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggagg 17708242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 30110753 - 30110802
Alignment:
Q  197 gggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||| |||||||||||||||||||||||||| |  || ||||||||||    
T  30110753 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggagg 30110802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 33136821 - 33136772
Alignment:
Q  197 gggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||||||||| |||||||||||| ||||| | ||| ||||||||||||    
T  33136821 gggtggtgaggcttggaagtggagggggaggctgtttccgtgggaggagg 33136772  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 33743291 - 33743340
Alignment:
Q  195 gtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggagga 244  Q
    ||||||||||||||||| ||||||| |||||| ||||| | |||||||||    
T  33743291 gtgggtggtgaggcgtgaaagtggatgaggagattattggtgtgggagga 33743340  T

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Target: scaffold0289 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 122 - 251
Target Start/End: Complemental strand, 11553 - 11424
Alignment:
Q  122 ttatgcaagacttgttgagttatcggaaaataaactagctacggtgtcggagatgtttactttagattggggggtgggtggtgaggcgtggaagtggagg 221  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| || |||||| |||| ||| |||| ||||||||||||||||||||    
T  11553 ttatgcaagactttttgagttatcgaaaaataagctagctacggtgtcggagatgcttgctttaggttggagggagggtagtgaggcgtggaagtggagg 11454  T
Q  222 aggaggttatttgcgtgggaggaggttttg 251  Q
    ||||||||||||| ||||||||||||||||    
T  11453 aggaggttatttgtgtgggaggaggttttg 11424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 136 - 254
Target Start/End: Complemental strand, 25135778 - 25135660
Alignment:
Q  136 ttgagttatcggaaaataaactagctacggtgtcggagatgtttactttagattggggggtgggtggtgaggcgtggaagtggaggaggaggttatttgc 235  Q
    ||||||||||||||||||||||||  ||||||||||||||||||   ||||  |||||||  ||||| ||||||||||||||||||||||||||||||||    
T  25135778 ttgagttatcggaaaataaactagtcacggtgtcggagatgtttgtgttagggtggggggctggtggagaggcgtggaagtggaggaggaggttatttgc 25135679  T
Q  236 gtgggaggaggttttggtg 254  Q
    |||||| ||||||||||||    
T  25135678 gtgggatgaggttttggtg 25135660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 246
Target Start/End: Original strand, 10349381 - 10349482
Alignment:
Q  145 cggaaaataaactagctacggtgtcggagatgtttactttagattggggggtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggagga 244  Q
    |||| |||||||||||||||||||| |||||||||   ||||  |||||||| || ||||| |||||||||||  | |||||||||||||||||||||||    
T  10349381 cggacaataaactagctacggtgtcagagatgtttgagttagggtggggggttggaggtgaagcgtggaagtgtcgtaggaggttatttgcgtgggagga 10349480  T
Q  245 gg 246  Q
    ||    
T  10349481 gg 10349482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 13026972 - 13026927
Alignment:
Q  201 ggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||||||||||||||| ||||||||||| |||| ||||||||||    
T  13026972 ggtgaggcgtggaagtggcggaggaggttacttgcatgggaggagg 13026927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 18921305 - 18921350
Alignment:
Q  201 ggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||||||    
T  18921305 ggtgatgcgtggaggtggaggaggaggttgtttgcgtgggaggagg 18921350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 40305281 - 40305232
Alignment:
Q  195 gtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggagga 244  Q
    |||||||||||||||||||||| |||||||||  |||| |||||||||||    
T  40305281 gtgggtggtgaggcgtggaagttgaggaggagactattggcgtgggagga 40305232  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 25913318 - 25913360
Alignment:
Q  204 gaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||||||||||||   |||||||||||||||||||||||||    
T  25913318 gaggcgtggaagtggcataggaggttatttgcgtgggaggagg 25913360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 18106384 - 18106433
Alignment:
Q  197 gggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||| |||||||||||||||||||||||||| |  || ||||||||||    
T  18106384 gggtggggaggcgtggaagtggaggaggaggttgtgggcctgggaggagg 18106433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 34322147 - 34322196
Alignment:
Q  197 gggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||| |||||||||||||||||||||||||| |  || ||||||||||    
T  34322147 gggtggggaggcgtggaagtggaggaggaggttgtgggcctgggaggagg 34322196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 42778550 - 42778501
Alignment:
Q  197 gggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||| |||||||||||||||||||||||||| |  || ||||||||||    
T  42778550 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggagg 42778501  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 53486781 - 53486830
Alignment:
Q  197 gggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||| |||||||||||||||||||||||||| |  || ||||||||||    
T  53486781 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggagg 53486830  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 246
Target Start/End: Original strand, 48352094 - 48352195
Alignment:
Q  145 cggaaaataaactagctacggtgtcggagatgtttactttagattggggggtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggagga 244  Q
    |||| |||||||||||||||||||||||||||| |   ||||  |||||  | || |||||||||||||||||| |||||||||||||||| ||||||||    
T  48352094 cggacaataaactagctacggtgtcggagatgtgtgagttaggatggggttttggaggtgaggcgtggaagtggcggaggaggttatttgcttgggagga 48352193  T
Q  245 gg 246  Q
    ||    
T  48352194 gg 48352195  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 47537580 - 47537531
Alignment:
Q  197 gggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||| |||||||||||||||||||||||||| |  || ||||||||||    
T  47537580 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggagg 47537531  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 48192111 - 48192062
Alignment:
Q  197 gggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||| |||||||||||||||||||||||||| |  || ||||||||||    
T  48192111 gggtggggaggcgtggaagtggaggaggaggttgtgggcctgggaggagg 48192062  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 246
Target Start/End: Original strand, 22113895 - 22113996
Alignment:
Q  145 cggaaaataaactagctacggtgtcggagatgtttactttagattggggggtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggagga 244  Q
    |||| |||||| ||||||||||||| |||||||||   ||||  |||||||| || ||||| |||||||||||| | ||||||||||||| |||||||||    
T  22113895 cggacaataaattagctacggtgtcagagatgtttgagttagggtggggggttggaggtgaagcgtggaagtggcgtaggaggttatttgtgtgggagga 22113994  T
Q  245 gg 246  Q
    ||    
T  22113995 gg 22113996  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 42457097 - 42457143
Alignment:
Q  200 tggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||    
T  42457097 tggtgaggcgtggaagtggaggcggaggttgtttgcgtgggaggagg 42457143  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 19315683 - 19315620
Alignment:
Q  183 ttagattggggggtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||| |||||||| ||  ||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  19315683 ttaggttggggggaggagggtgaggcgtggaggtggaggcggaggttgtttgcgtgggaggagg 19315620  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 27515923 - 27515878
Alignment:
Q  201 ggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    ||||| |||||||||||| | |||||||||||||||||||||||||    
T  27515923 ggtgaagcgtggaagtggcgtaggaggttatttgcgtgggaggagg 27515878  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 42918009 - 42918062
Alignment:
Q  191 gggggtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggagga 244  Q
    |||||| || |||||||||||||| ||| |||||||||||||||| ||||||||    
T  42918009 gggggttggaggtgaggcgtggaaatggcggaggaggttatttgcttgggagga 42918062  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 4415528 - 4415577
Alignment:
Q  197 gggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||| |||||||||||||||||||||||||| |  || ||||||||||    
T  4415528 gggtggggaggcgtggaagtggaggaggaggttgtgggcctgggaggagg 4415577  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 4926190 - 4926247
Alignment:
Q  189 tggggggtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    ||||| ||| |||| | |||||||||||||||| ||||||| ||||| ||||||||||    
T  4926190 tggggtgtgagtggagtggcgtggaagtggaggcggaggttgtttgcatgggaggagg 4926247  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 43408352 - 43408447
Alignment:
Q  150 aataaactagctacggtgtcggagatgtttactttagattggggggtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||||||||||||||||| |||||||||   ||||  |||||||| |  ||||| |||||| ||||| | |||||||||||||||||||||||||    
T  43408352 aataaactagctacggtgtcagagatgtttgagttagggtggggggttgaaggtgaagcgtgg-agtggcgtaggaggttatttgcgtgggaggagg 43408447  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 1998417 - 1998354
Alignment:
Q  183 ttagattggggggtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||| ||||||||| || ||||| ||||||| |||||||||| |||| ||||||||||||||||    
T  1998417 ttaggttggggggttgggggtgatgcgtggaggtggaggagggggttgtttgcgtgggaggagg 1998354  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 246
Target Start/End: Complemental strand, 9584108 - 9584069
Alignment:
Q  207 gcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  9584108 gcgtggaagtggaggcggaggttgtttgcgtgggaggagg 9584069  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 42474471 - 42474413
Alignment:
Q  188 ttggggggtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||| |||| ||||||||| ||||||||||| |||||  | ||||||||||||||||    
T  42474471 ttggggagtggatggtgaggcatggaagtggagaaggagactttttgcgtgggaggagg 42474413  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 1380394 - 1380345
Alignment:
Q  197 gggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||| |||||||||||||||||||||||||| |  || ||||||||||    
T  1380394 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggagg 1380345  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 2999576 - 2999625
Alignment:
Q  197 gggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||| |||||||||||||||||||||||||| |  || ||||||||||    
T  2999576 gggtggggaggcgtggaagtggaggaggaggttgtgggcctgggaggagg 2999625  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 18182746 - 18182647
Alignment:
Q  145 cggaaaataaactagctacggtgtcggagatgtttactttagattggggggtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggagga 244  Q
    |||||||||| ||||| ||||||  ||||||||||   |||   |||| ||||| ||| ||||||||||||||| ||||||||||||||||||| |||||    
T  18182746 cggaaaataagctagccacggtggaggagatgtttttgttaaggtgggaggtggatggagaggcgtggaagtggcggaggaggttatttgcgtgagagga 18182647  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 45255664 - 45255706
Alignment:
Q  204 gaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    ||||||||||||||||||||||||||||  || ||||||||||    
T  45255664 gaggcgtggaagtggaggaggaggttatgggcttgggaggagg 45255706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 17659143 - 17659094
Alignment:
Q  197 gggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||| |||||||||||||||||||||||||| |  || ||||||||||    
T  17659143 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggagg 17659094  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 29681621 - 29681669
Alignment:
Q  198 ggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    ||||| ||||||||||||| |||||||||||| ||||| ||| ||||||    
T  29681621 ggtggggaggcgtggaagtagaggaggaggttgtttgcttggaaggagg 29681669  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 31687132 - 31687088
Alignment:
Q  202 gtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||| ||||||| ||||||| ||||||| ||||||||||||||||    
T  31687132 gtgacgcgtggaggtggaggcggaggttgtttgcgtgggaggagg 31687088  T

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Target: scaffold0225 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 5886 - 5943
Alignment:
Q  189 tggggggtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||||||| |||||||||||||| ||||||  | |||||||| |||||||||||||    
T  5886 tggggggtggatggtgaggcgtggaggtggagacgtaggttattcgcgtgggaggagg 5943  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 7579383 - 7579286
Alignment:
Q  149 aaataaactagctacggtgtcggagatgtttactttagattggggggtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    ||||| |||||||||||||||| |||||| |   ||||  |||||  | || || ||||||||||||||| |||| ||||||||||| ||||||||||    
T  7579383 aaatatactagctacggtgtcgaagatgtgtgagttaggatggggttttggaggcgaggcgtggaagtggcggagaaggttatttgcttgggaggagg 7579286  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 7218091 - 7218206
Alignment:
Q  129 agacttgttgagttatcggaaaataaactagctacggtgtcggagatgtttactttagattggggggtgggtggtgaggcgtggaagtggaggaggaggt 228  Q
    |||||| |||| || ||||||||||||   || ||||||| ||||||||||   ||||  ||||||| || ||| |  |||||||  ||||||||||| |    
T  7218091 agactttttgaattgtcggaaaataaagaggccacggtgtgggagatgtttgtgttaggatggggggcggatgggggagcgtggagatggaggaggagat 7218190  T
Q  229 tatttgcgtgggagga 244  Q
    ||||||||||||||||    
T  7218191 tatttgcgtgggagga 7218206  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 649894 - 649943
Alignment:
Q  197 gggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||| |||||||||||||||||||||||||| |  || ||||||||||    
T  649894 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggagg 649943  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 9199080 - 9199129
Alignment:
Q  197 gggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||| |||||||||||||||||||||||||| |  || ||||||||||    
T  9199080 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggagg 9199129  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 246
Target Start/End: Complemental strand, 23660516 - 23660420
Alignment:
Q  150 aataaactagctacggtgtcggagatgtttactttagattggggggtgggtggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    |||||||| | |||||||| | ||||||||   ||||  |||||||| || ||||| |||||||||||| | ||||||||| ||| ||||| |||||    
T  23660516 aataaactggttacggtgttgcagatgtttgagttagggtggggggttggaggtgaagcgtggaagtggcgtaggaggttacttgtgtgggtggagg 23660420  T

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Target: scaffold0134 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 41667 - 41713
Alignment:
Q  200 tggtgaggcgtggaagtggaggaggaggttatttgcgtgggaggagg 246  Q
    ||||||||||| ||||||||| ||||| || ||||||||||||||||    
T  41667 tggtgaggcgttgaagtggagaaggagattgtttgcgtgggaggagg 41713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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