View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10278_low_1 (Length: 469)
Name: NF10278_low_1
Description: NF10278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10278_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 114 - 437
Target Start/End: Original strand, 11026998 - 11027320
Alignment:
| Q |
114 |
tcaatcaaattgacattagaatagcaccaaattaagtaaatgctaaagtggaggagcttatcatatagatcttggggnnnnnnnactcatagatgttaag |
213 |
Q |
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| T |
11026998 |
tcaatcaaattgacattagaatagcaccaaattaagtaaatgctaaagtggaggagcttatcatatagatcttggggtttttttactcatagattttaag |
11027097 |
T |
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| Q |
214 |
ttaattttcttgatgttgacattttgtactgcaaaggtttacccattttaaannnnnnnaaacagatgaacagccacagatcaccatcttacaccttcca |
313 |
Q |
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| T |
11027098 |
ttaattttcttgatgttgacattttgtactgcaaaggtttacc-attttaattttttttaaacaggtgaacagccacagatcaccagcttacaccttcca |
11027196 |
T |
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| Q |
314 |
acttcacaatccaaaatatacaaatggaacctaattttgtcacaccatatactgttccaacaattcattaaaattatatcacatttcaaaacacttaaat |
413 |
Q |
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| T |
11027197 |
acttcacaatccaaaatatacaaatggaaccaaattttgtaacaccatatactgttccaacaattcattataattatatcacatatcaaaacacttaaat |
11027296 |
T |
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| Q |
414 |
tatactatagcttctctccatgtg |
437 |
Q |
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| T |
11027297 |
tatactatagcttctctccatgtg |
11027320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 11026899 - 11026960
Alignment:
| Q |
16 |
acaagtaacccacaatttagatgtaattcaagagatagattgacttacaattgtgaaatata |
77 |
Q |
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| T |
11026899 |
acaagtaacccacaatttagatgtaattcaagagatagattgacttacaattgtgaaatata |
11026960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 10931258 - 10931299
Alignment:
| Q |
35 |
gatgtaattcaagagatagattgacttacaattgtgaaatat |
76 |
Q |
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| T |
10931258 |
gatgtaattcaagagttagattgacttacaattgtaaaatat |
10931299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 10907371 - 10907415
Alignment:
| Q |
32 |
ttagatgtaattcaagagatagattgacttacaattgtgaaatat |
76 |
Q |
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| T |
10907371 |
ttagatgtaattcaagagttagaatgacttacaattgtaaaatat |
10907415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 10993459 - 10993503
Alignment:
| Q |
32 |
ttagatgtaattcaagagatagattgacttacaattgtgaaatat |
76 |
Q |
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| T |
10993459 |
ttagatgtaattcaagagttggaatgacttacaattgtaaaatat |
10993503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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