View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10278_low_10 (Length: 227)
Name: NF10278_low_10
Description: NF10278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10278_low_10 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33521895 - 33521668
Alignment:
| Q |
1 |
tttaggagttatggcaaatgttttaacagaaaacatcacatggaaaattcatgttgaggccaaagcaacaatctcatcatgtggagcactttccacgcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33521895 |
tttaggagttatggcaaatgttttaacagaaaacatcacatagaaaattcaagttgaggccaaagcaacaatctcatcatgtggagcactttccacgcca |
33521796 |
T |
|
| Q |
101 |
cctttaatgatctctagtggattaaagaataagaatatcggctgacactttcatcttcatcccgtgctaatgacgtggggacattttccagacacaatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33521795 |
cctttaatgatctctagtggattaaagaataagaatatcggccgacaccttcatcttcatccggtgctaatgacgtggggacattttccagacacaatgt |
33521696 |
T |
|
| Q |
201 |
ctgatctcaa-ggtaaaagctatgaggg |
227 |
Q |
| |
|
|||||||||| ||||||||||||||||| |
|
|
| T |
33521695 |
ctgatctcaagggtaaaagctatgaggg |
33521668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University