View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10278_low_2 (Length: 417)
Name: NF10278_low_2
Description: NF10278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10278_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 42530002 - 42530417
Alignment:
| Q |
1 |
ctggttacatcattggaggatcacttgttacggcatccactatggcatgcacacttcaacttaaaccacaattacataacaagtgatcagaacctgatca |
100 |
Q |
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| T |
42530002 |
ctggttacatcattggaggatcacttgttacgacatccactatggcatgcacacttcaacttaaaccacaattacataacaagtgatcagaacctgatca |
42530101 |
T |
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| Q |
101 |
tttcttactgcagggatgactctgaagatcaatcgaagaaaaccaatgcggtaggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42530102 |
tttcttactgcagggatgactctgaagatcaatcgaaggaaaccaatgcggtaggttccatcaatgtgagcagcatcttgtcggggaaatgtgtggcgaa |
42530201 |
T |
|
| Q |
201 |
aattaatgctgcaaaagctttggagtgcattgattcatctnnnnnnntgtcagtt------acagaggctttggagggtataaccaccctcta------- |
287 |
Q |
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| T |
42530202 |
aattaatgctgcaaaagctttggagtgcattgattcatctcaaataatgtcagttccagtcccagaggctttggagggtataaccaccctctattatgaa |
42530301 |
T |
|
| Q |
288 |
-ttataatgaagaccgccaggaacacgatttatacgggtaacagacatggtcatgttcatgtctggtccaactccaaccaactgatgataaaaaaggagt |
386 |
Q |
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| T |
42530302 |
tttatgatgaagacc----ggaacgcgatttatacgggtaacagacatggtcttgttcatgtctggtccaactccaaccaactgatgataaaaaaggaat |
42530397 |
T |
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| Q |
387 |
aggttttattgtttcttctc |
406 |
Q |
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| T |
42530398 |
aggttttattgtttcttctc |
42530417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 42535721 - 42536119
Alignment:
| Q |
1 |
ctggttacatcattggaggatcacttgttacggcatccactatggcatgcacacttcaacttaaaccacaattacataacaagtgatcagaacctgatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
42535721 |
ctggttacatcattggaggatcacttgttacggcatccactatggcatccagacttcaa---aaacaacaattacataacaagtgatcagaacctgatca |
42535817 |
T |
|
| Q |
101 |
tttcttactgcagggatgactctgaagatcaatcgaagaaaaccaatgcggtaggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||| | ||||||||||||||||| ||| |||||| |||||||||||||||||||| |
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| T |
42535818 |
tttcttactgcagggatgactctgaagatcaatcgatggttaccaatgtgataggttccatcaatgtgagcaacatcttatcggggaaatgtgtggcgaa |
42535917 |
T |
|
| Q |
201 |
aattaatgctgcaaaagctttggagtgcattgattcatctnnnnnnntgtcagttacagaggctttggagggtataaccaccctctattataatgaagac |
300 |
Q |
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| T |
42535918 |
aattaatgctacaaaagctttggagtgcattgattcatctaaaaaaatgtcagttacagaggctttggagggtataaccaccctctattatgatgaagac |
42536017 |
T |
|
| Q |
301 |
cgccaggaacacgatttatacgggtaacagacatggtcatgttcatgtctggtccaactccaaccaactgatgataaaaaaggagtaggttttattgttt |
400 |
Q |
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| T |
42536018 |
c----ggaacgcgatttatacgggtaacagacatggtcatgttcatgtctggtccaactccaaccaactaatgataaaaaaggaataggttttattgttt |
42536113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 27826012 - 27826073
Alignment:
| Q |
154 |
ggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaa |
215 |
Q |
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| T |
27826012 |
ggttccatcaatgtgagcaacatcttgacagggaaatgtgtggcgaaaattaatgctgcaaa |
27826073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 27825797 - 27825857
Alignment:
| Q |
73 |
tacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaat |
133 |
Q |
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|||||||||||||||||| ||||||| || || ||||||| | ||| ||||||||||||| |
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| T |
27825797 |
tacataacaagtgatcaggacctgattatatcgtactgcaaagctgaatctgaagatcaat |
27825857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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