View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10278_low_3 (Length: 296)
Name: NF10278_low_3
Description: NF10278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10278_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 278
Target Start/End: Complemental strand, 46937386 - 46937116
Alignment:
| Q |
8 |
agaagaaccattcttctatcttttggagttgagttggttatgacagatcctgcaaagggaatgaaaggggcagttcagaaagctgaagagatattaacca |
107 |
Q |
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| T |
46937386 |
agaagaaccattcttctatcttttggagctgagttggttctgacagatcctgcaaagggaatgaaaggggcagttcagaaagctgaagagatattaaccg |
46937287 |
T |
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| Q |
108 |
agactccaaatgcctatatccttcagcaatttgaaaaccccgccaatccaaaggtatctatctactcatttgttctaaaactttggcagttaatagtcga |
207 |
Q |
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| T |
46937286 |
agactccaaatgcctatatccttcagcaatttgaaaaccccgccaatccaaaggtatctatctactcatttgttctaaaactttggcagttaatagtcga |
46937187 |
T |
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| Q |
208 |
caactttggatgacacatttgttattatcgttgtatttacaggtgcattatgaaaccactggtccagagat |
278 |
Q |
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| T |
46937186 |
caactttggatgacacatttgttattatcgttgtatttacaggtgcattatgaaaccactggtccagagat |
46937116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 36276975 - 36277132
Alignment:
| Q |
5 |
gagagaagaaccattcttctatcttttggagttgagttggttatgacagatcctgcaaagggaatgaaaggggcagttcagaaagctgaagagatattaa |
104 |
Q |
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| T |
36276975 |
gagagaagaaccattcttcgcgcatttggtgctgagttagttctcacagatccagctaaaggcatgaaaggagctgttcagaaagccgaagagatactag |
36277074 |
T |
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| Q |
105 |
ccaagactccaaatgcctatatccttcagcaatttgaaaaccccgccaatccaaaggt |
162 |
Q |
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| T |
36277075 |
caaagactcccaatgcttacattcttcagcaatttgaaaatcctgcaaacccaaaggt |
36277132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 862322 - 862478
Alignment:
| Q |
8 |
agaagaaccattcttctatcttttggagttgagttggttatgacagatcctgcaaagggaatgaaaggggcagttcagaaagctgaagagatattaacca |
107 |
Q |
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||||||| |||||| || ||||||||| ||| |||||| ||||||| |||||||||||||||||||| || |||||||||||||||||| | || | | |
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| T |
862322 |
agaagaatcattctattagcttttggagctgaattggttttgacagaccctgcaaagggaatgaaaggagctgttcagaaagctgaagagctgttggcta |
862421 |
T |
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| Q |
108 |
agactccaaatgcctatatccttcagcaatttgaaaaccccgccaatccaaaggtat |
164 |
Q |
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| T |
862422 |
agacacccaatgcctacatacttcaacaatttgaaaaccctgccaatcccaaggtat |
862478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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