View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10278_low_4 (Length: 294)
Name: NF10278_low_4
Description: NF10278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10278_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 32036335 - 32036600
Alignment:
| Q |
19 |
taaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttgtttttctggcacttcaatgagtatcttgctaacat |
118 |
Q |
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| T |
32036335 |
taaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttgtttttctggcacttcaatgagtatcttgctaacat |
32036434 |
T |
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| Q |
119 |
tgcttgctccaaatactttgtgaactttggcgaatttcttgcactcattagaatggaagtaaggtgcaaataagcaatctggtgtgcatcttcttttcaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036435 |
tgcttgctccaaatactttgtgaactttggcgaatttcttgcactcattagaatggaagtaaggtgcaaataagcaatctggtgtgcatcttcttttcaa |
32036534 |
T |
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| Q |
219 |
taatttgcaagctgcacaagatgagcttgaacgtggctcataaccctttatgcctttcatctcact |
284 |
Q |
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| T |
32036535 |
taatttgcaagctgcacaagatgagcttgaacgtggctcataaccctttatgcctttcatttcact |
32036600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 25 - 266
Target Start/End: Original strand, 35808708 - 35808949
Alignment:
| Q |
25 |
gggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttgtttttctggcacttcaatgagtatcttgctaacattgcttg |
124 |
Q |
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| T |
35808708 |
gggtctctaagccttgcatcagcttcataagccaaagaattcacagtttcttccctttgttcctctggaacttcaatcagaatcttgctcacattgcttg |
35808807 |
T |
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| Q |
125 |
ctccaaatactttgtgaactttggcgaatttcttgcactcattagaatggaagtaaggtgcaaataagcaatctggtgtgcatcttcttttcaataattt |
224 |
Q |
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| T |
35808808 |
ctccaaatactttgtgaactttcgcgaatttcttgcactcatcggagcgaaagtatggcgcaaatatacaatttggtatgcatcttcttttcagaaattt |
35808907 |
T |
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| Q |
225 |
gcaagctgcacaagatgagcttgaacgtggctcataaccctt |
266 |
Q |
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| T |
35808908 |
gcaggctgcacaagaggaacttgaccttggttcataaccctt |
35808949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 600908 - 600801
Alignment:
| Q |
36 |
ccttgcttcagcttcataagcaagagaattcactgtgtcttctctttgtttttctggcacttcaatgagtatcttgctaacattgcttgctccaaatact |
135 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||| | | |||||| | || || ||||||||||||||||| ||||||| | |
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| T |
600908 |
ccttgcttcagcttcataagctagagaattcactgtatcttctctttgatgaggtaagacttcatttagaattttgctaacattgcttgcaccaaatatt |
600809 |
T |
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| Q |
136 |
ttgtgaac |
143 |
Q |
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| T |
600808 |
ttgtgaac |
600801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 591350 - 591284
Alignment:
| Q |
17 |
cataaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttg |
83 |
Q |
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|||| ||||| ||| ||| ||||||||||||||||||||| ||||||||||| || ||||||||||| |
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| T |
591350 |
catacactggatctttaatccttgcttcagcttcataagctagagaattcaccgtatcttctctttg |
591284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 12360672 - 12360798
Alignment:
| Q |
17 |
cataaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttgtttttctggcacttcaatgagtatcttgctaac |
116 |
Q |
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|||||||||| ||| | | |||||| |||||||||||||||||||| ||||||| ||||| ||||| | | | |||||||| | || | || || || |
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| T |
12360672 |
cataaactggatcttttatccttgcctcagcttcataagcaagagagttcactgcatcttccctttgatgtggttgcacttcattcagaagtttacttac |
12360771 |
T |
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| Q |
117 |
attgcttgctccaaatactttgtgaac |
143 |
Q |
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||||||||| ||||||| ||||||||| |
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| T |
12360772 |
attgcttgcaccaaatattttgtgaac |
12360798 |
T |
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