View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10278_low_9 (Length: 242)

Name: NF10278_low_9
Description: NF10278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10278_low_9
NF10278_low_9
[»] chr3 (25 HSPs)
chr3 (17-242)||(22431448-22431673)
chr3 (23-242)||(22468250-22468470)
chr3 (22-239)||(22368213-22368431)
chr3 (23-239)||(22630741-22630958)
chr3 (79-242)||(22632223-22632387)
chr3 (28-232)||(22443046-22443251)
chr3 (23-242)||(22358304-22358524)
chr3 (23-239)||(22436936-22437153)
chr3 (23-242)||(22635805-22636025)
chr3 (23-239)||(22458791-22459008)
chr3 (23-239)||(22481772-22481989)
chr3 (22-221)||(22179382-22179582)
chr3 (19-221)||(22052698-22052901)
chr3 (20-221)||(22115050-22115252)
chr3 (22-221)||(22027965-22028165)
chr3 (19-221)||(21945589-21945792)
chr3 (81-221)||(21930386-21930527)
chr3 (22-221)||(22186953-22187153)
chr3 (19-221)||(21937118-21937321)
chr3 (79-147)||(22354171-22354240)
chr3 (22-217)||(22034486-22034682)
chr3 (22-191)||(30989606-30989776)
chr3 (32-221)||(22104688-22104878)
chr3 (23-212)||(22615561-22615751)
chr3 (30-62)||(22208145-22208177)
[»] chr4 (1 HSPs)
chr4 (35-239)||(29610885-29611075)
[»] chr8 (1 HSPs)
chr8 (28-129)||(27294606-27294707)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 22431448 - 22431673
Alignment:
Q  17 atatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttccca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22431448 atatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttccca 22431547  T
Q  117 gtcctcccattccacaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22431548 gtcctcccattccacaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatca 22431647  T
Q  217 gcttcatccatataaaatggagcgtc 242  Q
    ||||||||||||||||||||||||||    
T  22431648 gcttcatccatataaaatggagcgtc 22431673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 22468250 - 22468470
Alignment:
Q  23 tatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctc 122  Q
    |||||| ||||||| |||||||||| | |||||||||| ||||||| |||| | | |||||||||||||||||||| || ||||||||||||||||||||    
T  22468250 tatggtcgagacaccgtgatccatacatgacaatcaaaatgtttaacgaccttttggttgtcaaaaactttcttggctatagtggtttttcccagtcctc 22468349  T
Q  123 ccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagcttc 221  Q
    ||||||| || |||||||| || ||| ||||| || |||| | ||||| | ||||||||||| |||||| |||||||||||||||||||| |||||||||    
T  22468350 ccattccaactatggagacaacggtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcgtggctcttcaaatcccacaagatcagcttc 22468449  T
Q  222 atccatataaaatggagcgtc 242  Q
    |||||||||||||||||||||    
T  22468450 atccatataaaatggagcgtc 22468470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 22368213 - 22368431
Alignment:
Q  22 atatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcct 121  Q
    ||||||| |||| || ||||||||||||||||||||||||||||||| |||| | | |||||||||||||||||||| ||||||||||||||||||||||    
T  22368213 atatggtcgagaaaccgtgatccataaacgacaatcaaagtgtttaacgaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcct 22368312  T
Q  122 cccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagctt 220  Q
    |||||||| ||||||||||| |||||| | | | || |||| | ||||| | ||||||||||| ||||||||| | | |||||||| ||  ||||||| |    
T  22368313 cccattccaacaatggagacaactgtgcggtgtgctcttccctctaccaacaaatcaatcaatttgtctcttgacacatcaaatcctaccgcatcagcat 22368412  T
Q  221 catccatataaaatggagc 239  Q
    ||||||| |||| ||||||    
T  22368413 catccatgtaaagtggagc 22368431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 22630741 - 22630958
Alignment:
Q  23 tatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctc 122  Q
    |||||| ||||||| |||||||||  | |||||||||||||||||| |||| |   ||||||||||| ||||||||  ||||||||||| ||||||||||    
T  22630741 tatggtcgagacaccgtgatccattcatgacaatcaaagtgtttaacgacctttcggttgtcaaaaattttcttggcaagagtggttttccccagtcctc 22630840  T
Q  123 ccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagcttc 221  Q
    ||||||| ||||| ||||| |||||| | ||| || |||| | || |||||||||||||||| |||||| |||||| ||||| |||||||||||||||||    
T  22630841 ccattccaacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaatcaatttgtctcgtggctcgtcaaagcccacaacatcagcttc 22630940  T
Q  222 atccatataaaatggagc 239  Q
    ||||| ||| ||||||||    
T  22630941 atccaaatacaatggagc 22630958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 79 - 242
Target Start/End: Original strand, 22632223 - 22632387
Alignment:
Q  79 gttgtcaaaaactttcttggttagagtggtttttcccagtcctcccattccac-aatggagaccactgtgagctcttcttttccatttaccagccaatca 177  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||  ||||||||| |||||| | ||| || |||| | ||||||||||| |    
T  22632223 gttgtcaaaaactttcttggctagagtggttttccccagtcctcccattccaataatggagacaactgtgcgatctgctcttccctctaccagccaatta 22632322  T
Q  178 atcaatatgtctcttggctcttcaaatcccacaacatcagcttcatccatataaaatggagcgtc 242  Q
    || | | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22632323 attagtttctctattggctcttcaaatcccacaacatcagcttcatccatataaaatggagcgtc 22632387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 28 - 232
Target Start/End: Original strand, 22443046 - 22443251
Alignment:
Q  28 ttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctcccatt 127  Q
    |||||||||  ||||||||||| |||| |||||||| ||||  ||| | | ||||||||||| ||   ||| ||||||||||||||||| ||||||||||    
T  22443046 ttgagacaccatgatccataaaagacagtcaaagtgcttaactaccttttggttgtcaaaaatttgtctggctagagtggtttttcccaatcctcccatt 22443145  T
Q  128 cca-caatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagcttcatcca 226  Q
    ||| |||||||||| |||||| | |||||| |||| | ||||| | ||||||||||| ||||||||||||||||||| || |||| ||||||||||||||    
T  22443146 ccaacaatggagacaactgtgcggtcttctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaagccaacaatatcagcttcatcca 22443245  T
Q  227 tataaa 232  Q
    ||||||    
T  22443246 tataaa 22443251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 22358304 - 22358524
Alignment:
Q  23 tatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctc 122  Q
    |||||| ||||||| || ||||||| ||||| |||||||||||| | |||| |   |||||||||||||||||| | |||||||||||||||||||||||    
T  22358304 tatggtcgagacaccgtaatccatacacgacgatcaaagtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctc 22358403  T
Q  123 ccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagcttc 221  Q
    ||||||| ||||||||||| | |||  | ||| || ||||   |||||   ||||||||||| ||||||||| ||  |||||||| ||||||||||||||    
T  22358404 ccattccaacaatggagacaattgtccggtctgctcttcctgctaccaaaaaatcaatcaatttgtctcttgtcttatcaaatcctacaacatcagcttc 22358503  T
Q  222 atccatataaaatggagcgtc 242  Q
    | |||| |||| |||||||||    
T  22358504 aaccatgtaaagtggagcgtc 22358524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 22436936 - 22437153
Alignment:
Q  23 tatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctc 122  Q
    |||| |||||||||||||||||||| | |||| ||||| ||||| | |||  || |||| ||||||||||||||||  ||||| ||||||||  | ||||    
T  22436936 tatgattgagacactgtgatccatacatgacagtcaaattgttttaagactttgatgttctcaaaaactttcttggccagagtagtttttccttgccctc 22437035  T
Q  123 ccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagcttc 221  Q
    ||||||| ||||| ||||| ||||   ||||| || ||||  | |||||||||| || |||||||  | | ||||||||||| ||||| |||||||||||    
T  22437036 ccattcctacaatagagacaactgcacgctctactcttcccctcaccagccaattaaacaatatgcgtttgggctcttcaaagcccacgacatcagcttc 22437135  T
Q  222 atccatataaaatggagc 239  Q
    || ||||| |||||||||    
T  22437136 attcatatgaaatggagc 22437153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 22635805 - 22636025
Alignment:
Q  23 tatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctc 122  Q
    |||||| ||||||| || ||||||| |||||||||||||| ||| | |||| |   |||||||||||||||||| | |||||||||||||||  ||||||    
T  22635805 tatggtcgagacaccgtaatccatacacgacaatcaaagtattttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttccttgtcctc 22635904  T
Q  123 ccattccaca-atggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagcttc 221  Q
    |||||||| | |||||||| | |||  | ||| || ||||   |||||    ||||||||||  |||||||||||  |||||||| ||||||||||||||    
T  22635905 ccattccaaagatggagacaattgtccggtctgctcttcccgctaccaaaagatcaatcaattcgtctcttggcttatcaaatcctacaacatcagcttc 22636004  T
Q  222 atccatataaaatggagcgtc 242  Q
    | |||| |||| |||||||||    
T  22636005 aaccatgtaaagtggagcgtc 22636025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 22458791 - 22459008
Alignment:
Q  23 tatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctc 122  Q
    |||| |||||||||| ||||||||| | |||||||||||||||||| || | |||||| ||||||||| ||||| |  ||||| ||||||||  ||||||    
T  22458791 tatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgtttttccttgtcctc 22458890  T
Q  123 ccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagcttc 221  Q
    || |||| ||||||| ||| | |||| || ||||| |  | | || || ||||||||| | ||||||||||||  ||||||| || ||||||||| ||||    
T  22458891 cctttccaacaatggtgacaattgtgtgcacttctctctcctctatcaaccaatcaattagtatgtctcttggaacttcaaagcctacaacatcatcttc 22458990  T
Q  222 atccatataaaatggagc 239  Q
    ||| ||| ||||| ||||    
T  22458991 atcgatacaaaattgagc 22459008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 22481772 - 22481989
Alignment:
Q  23 tatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctc 122  Q
    |||| |||||||||| ||||||||| | |||||||||||||||||| || | |||||| ||||||||| ||||| |  ||||| ||||||||  ||||||    
T  22481772 tatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgtttttccttgtcctc 22481871  T
Q  123 ccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagcttc 221  Q
    || |||| ||||||| ||| | |||| || ||||| |  | | || || ||||||||| | ||||||||||||  ||||||| || ||||||||| ||||    
T  22481872 cctttccaacaatggtgacaattgtgtgcacttctctctcctctatcaaccaatcaattagtatgtctcttggaacttcaaagcctacaacatcatcttc 22481971  T
Q  222 atccatataaaatggagc 239  Q
    ||| ||| ||||| ||||    
T  22481972 atcgatacaaaattgagc 22481989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 22179582 - 22179382
Alignment:
Q  22 atatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcct 121  Q
    ||||| |||||||||||| ||||||| ||||||||||||||||  || ||     ||| |||||||||||||||||| |||||| ||||||||  | |||    
T  22179582 atatgattgagacactgtaatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccct 22179483  T
Q  122 cccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagctt 220  Q
    |||||||| || | | | ||||| ||| ||||||   |||| | ||||| ||||||||||||| | | ||||||| |||||||||||||||| |||||||    
T  22179482 cccattcccaccacgaataccacagtgcgctctttccttccctgtaccatccaatcaatcaatctttttcttggcgcttcaaatcccacaacctcagctt 22179383  T
Q  221 c 221  Q
    |    
T  22179382 c 22179382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 22052901 - 22052698
Alignment:
Q  19 atcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagt 118  Q
    |||||||| |||||||||||| |||||||  ||||||||||| |||  || ||     ||| |||||||||||||||||| |||||| ||||||||  |     
T  22052901 atcatatgattgagacactgtaatccatacccgacaatcaaaatgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgc 22052802  T
Q  119 cctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcag 217  Q
    ||||||||||| || |  || ||||| ||| |||||||  |||| ||||||| ||||||||||||| | | ||||||  |||||||||||||||| ||||    
T  22052801 cctcccattcctaccagagaaaccacagtgcgctcttcccttccctttaccatccaatcaatcaatctttttcttggtacttcaaatcccacaacctcag 22052702  T
Q  218 cttc 221  Q
    ||||    
T  22052701 cttc 22052698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 22115252 - 22115050
Alignment:
Q  20 tcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtc 119  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||  || ||     ||| |||||||||||||||| | |||||||||||||||  | |    
T  22115252 tcatatgattgagacactgtgatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttctttgatagagtggtttttccttgcc 22115153  T
Q  120 ctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagc 218  Q
    |||||||||| || |  || |  || ||| |||||||  |||| | ||||| ||||||||||||| | | ||||||  |||||||||||||||| |||||    
T  22115152 ctcccattcctaccacagaaagaacagtgcgctcttcccttccctataccatccaatcaatcaatctttgtcttggtgcttcaaatcccacaacctcagc 22115053  T
Q  219 ttc 221  Q
    |||    
T  22115052 ttc 22115050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 22028165 - 22027965
Alignment:
Q  22 atatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcct 121  Q
    ||||| |||||||||||| ||||||| ||||||||||||||||   | ||     ||| |||||||||||||||||| |||||| ||||||||  | |||    
T  22028165 atatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccct 22028066  T
Q  122 cccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagctt 220  Q
    |||||||| || |  || ||||| ||| |||||||  |||| | ||||| ||||||| ||||| | | ||||||| |||||||||||||||| |||||||    
T  22028065 cccattcctaccacagacaccacagtgcgctcttcccttccctgtaccaaccaatcagtcaatctttttcttggcgcttcaaatcccacaacctcagctt 22027966  T
Q  221 c 221  Q
    |    
T  22027965 c 22027965  T

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Target: chr3; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 21945792 - 21945589
Alignment:
Q  19 atcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagt 118  Q
    |||||||| ||||||||| |||||||||| | ||||||||||||||  || |||    ||| |||||||||||||||||| |||||||||||||||  |     
T  21945792 atcatatgattgagacacagtgatccatacaagacaatcaaagtgtcaaatgacatccttgctgtcaaaaactttcttggctagagtggtttttccttgc 21945693  T
Q  119 cctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcag 217  Q
    ||||||||||| || | ||| || || ||| |||| ||  |||| ||||||| |||||||||||| |||||  || | | ||| || |||||||| ||||    
T  21945692 cctcccattcctaccacggaaactacagtgcgctcctcccttccctttaccatccaatcaatcaacatgtccttttgtttttcgaaacccacaacttcag 21945593  T
Q  218 cttc 221  Q
    ||||    
T  21945592 cttc 21945589  T

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Target: chr3; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 81 - 221
Target Start/End: Complemental strand, 21930527 - 21930386
Alignment:
Q  81 tgtcaaaaactttcttggttagagtggtttttcccagtcctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaat 179  Q
    |||||||||||||||||| |||||| ||||||||  | ||||||||||| || |  || ||||| ||| |||||||  |||| | ||||| |||||||||    
T  21930527 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctcttcccttccctgtaccatccaatcaat 21930428  T
Q  180 caatatgtctcttggctcttcaaatcccacaacatcagcttc 221  Q
    |||||| | ||||||  |||||||||||||||| ||||||||    
T  21930427 caatatttttcttggtgcttcaaatcccacaacctcagcttc 21930386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 22187153 - 22186953
Alignment:
Q  22 atatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcct 121  Q
    ||||| |||||||||||| ||||||| ||||||||||||||||   | ||     ||| |||||||||||||||||| |||||| ||||||||  | |||    
T  22187153 atatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccct 22187054  T
Q  122 cccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagctt 220  Q
    |||||||| || |  || |  || ||| |||||||  |||| ||||||| ||| ||||||||| | | ||||||| |||||||||||||||| |||||||    
T  22187053 cccattcctaccacagaaagaacagtgcgctcttcccttccctttaccatccactcaatcaatctttttcttggcgcttcaaatcccacaacctcagctt 22186954  T
Q  221 c 221  Q
    |    
T  22186953 c 22186953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 21937321 - 21937118
Alignment:
Q  19 atcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagt 118  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||  || |||    ||| |||||||| ||||||| | |||||||||||||||  |     
T  21937321 atcatatgcttgagacactgtgatccatacacgacaatcaaagtgtccaacgacatccttgctgtcaaaagctttcttagctagagtggtttttccttgc 21937222  T
Q  119 cctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcag 217  Q
    ||||||||||| || |  || || || ||| ||||| |  |||| |||| || |||||||||||| ||||| ||| | |  ||||| |||||||| ||||    
T  21937221 cctcccattcctaccacagaaacaacagtgcgctctgcccttccctttatcatccaatcaatcaaaatgtccctttgtttgtcaaagcccacaacgtcag 21937122  T
Q  218 cttc 221  Q
    ||||    
T  21937121 cttc 21937118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 22354171 - 22354240
Alignment:
Q  79 gttgtcaaaaactttcttggttagagtggtttttcccagtcctcccattcc-acaatggagaccactgtg 147  Q
    |||||||||||||||  ||| |||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  22354171 gttgtcaaaaacttttctggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtg 22354240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 22034682 - 22034486
Alignment:
Q  22 atatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcct 121  Q
    ||||| |||||||||||| ||||||| |||| |||||||||||   | ||     ||| |||||||||||||||||| |||||| ||||||||  | |||    
T  22034682 atatgattgagacactgtaatccatacacgataatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccct 22034583  T
Q  122 cccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcag 217  Q
    |||||||| || |  || ||||| ||| |||||||  |||| | ||||| ||||||||||||| | | ||||||  |||||||||||||||| ||||    
T  22034582 cccattcctaccacagacaccacagtgcgctcttcccttccctgtaccatccaatcaatcaatctttgtcttggtgcttcaaatcccacaacctcag 22034486  T

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Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 30989606 - 30989776
Alignment:
Q  22 atatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcct 121  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||  || |||  |  ||||||||||||||||||| || ||||||||||| ||  | |||    
T  30989606 atatgattgagacactatgatccatacacgacaatcaaagtgtccaatgacattcctgttgtcaaaaactttcttcgtaagagtggttttaccttgccct 30989705  T
Q  122 cccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctct 191  Q
    ||||| || || |  || |  || ||| |||| ||| |||| ||||||| |||||||||||| ||||||||    
T  30989706 cccatgcctactacagaaattaccgtgcgctcatctcttccctttaccaaccaatcaatcaacatgtctct 30989776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 221
Target Start/End: Complemental strand, 22104878 - 22104688
Alignment:
Q  32 gacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctcccattcc-a 130  Q
    |||||||||||||| | | ||||||||||||||  ||  ||    ||| ||||||||||| |||||| |||||| ||||||||  | ||||||||||| |    
T  22104878 gacactgtgatccaaacatgacaatcaaagtgtccaattacatccttgctgtcaaaaactctcttggctagagttgtttttccttgccctcccattccta 22104779  T
Q  131 caatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagcttc 221  Q
    | |  || || || ||| |||||||  |||| ||||||| ||||||||||||| | | ||||||  |||  ||||||||||||||||||||    
T  22104778 ccaccgaaactacagtgcgctcttccgttccctttaccatccaatcaatcaatctttttcttggtgctttgaatcccacaacatcagcttc 22104688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 22615561 - 22615751
Alignment:
Q  23 tatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctc 122  Q
    |||| |||||||||||||||||||| ||||||||||||||||  |   |||   ||| | |||||||| |||||||  ||||||||||| ||| | ||||    
T  22615561 tatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctc 22615660  T
Q  123 ccatt-ccacaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaac 212  Q
    ||||| |||| |  ||||| || ||| ||||| || |||| ||||||| |||  | |||||| | ||||| | ||||| ||||||||||||    
T  22615661 ccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccgatcaatctttctctagactcttgaaatcccacaac 22615751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 22208177 - 22208145
Alignment:
Q  30 gagacactgtgatccataaacgacaatcaaagt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  22208177 gagacactgtgatccatacacgacaatcaaagt 22208145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 239
Target Start/End: Original strand, 29610885 - 29611075
Alignment:
Q  35 actgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctcccattccacaat 134  Q
    ||||||||||||| ||||   |||||||||| || ||||   |||||||||||||||||||| |||||||| ||||||||| |          |||| |     
T  29610885 actgtgatccatacacgattgtcaaagtgttcaacgacc---ttgttgtcaaaaactttcttagttagagtagtttttccctg----------ccaccac 29610971  T
Q  135 ggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagcttcatccatataaaat 234  Q
    |||||| |||||| ||||| || |||| || |||||||||||||| ||||| ||||||||||||||||| ||  |||| |||||||||||||| ||||||    
T  29610972 ggagacgactgtgcgctctgctcttccctt-accagccaatcaattaatatttctcttggctcttcaaagcctgcaacgtcagcttcatccatgtaaaat 29611070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 27294707 - 27294606
Alignment:
Q  28 ttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctcccatt 127  Q
    |||||||||||||||||||| |||| | |||| ||||   | |||    ||| |||||||||||||||||  |||||||||||||||  |||||||||||    
T  27294707 ttgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgtcctcccatt 27294608  T
Q  128 cc 129  Q
    ||    
T  27294607 cc 27294606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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