View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10279_high_4 (Length: 239)
Name: NF10279_high_4
Description: NF10279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10279_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 12096088 - 12096310
Alignment:
| Q |
1 |
agtctagtccttggagtttaggaaggcggccgaggtaagcaggaattggaccggttaattggttgttattaagccctaaggtggctaaattggtaagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12096088 |
agtctagtccttggagtttaggaaggcggccgaggtaagcaggaattggaccggttaattggttgttattaagccctaaggtggctaaattggtaagttt |
12096187 |
T |
|
| Q |
101 |
gctaaagtaatcagggataggaccagttaggttgttccaattaaggaggacgaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12096188 |
gctaaagtaatcagggataggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgtt |
12096287 |
T |
|
| Q |
201 |
aggttagggaggaggcggaaaat |
223 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
12096288 |
aggttagggaggaggcgaaaaat |
12096310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 12079452 - 12079670
Alignment:
| Q |
5 |
tagtccttggagtttaggaaggcggccgaggtaagcaggaattggaccggttaattggttgttattaagccctaaggtggctaaattggtaagtttgcta |
104 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12079452 |
tagtccttgtagtttaggaaggcggccgaggtaagctggaattggaccggttaattggttgttattaagccctaaggtggctaaattggttagtttgcta |
12079551 |
T |
|
| Q |
105 |
aagtaatcagggataggaccagttaggttgttccaattaaggaggacgaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgtaaggt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12079552 |
aagtaatcagggataggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgttaggt |
12079651 |
T |
|
| Q |
205 |
tagggaggaggcggaaaat |
223 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
12079652 |
taggtaggaggcgtaaaat |
12079670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 1249161 - 1248967
Alignment:
| Q |
18 |
ttaggaaggcggccgaggtaagcaggaattggaccggttaattggttgttattaagccctaaggtggctaaattggtaagtttgctaaagtaatcaggga |
117 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
1249161 |
ttaggaaggcggccgaggtaagccggaacccgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcaggga |
1249062 |
T |
|
| Q |
118 |
taggaccagttaggttgttccaattaaggaggacgaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgtaaggttagggagg |
212 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||| || ||||||||||| ||| | |||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
1249061 |
taggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggagg |
1248967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University