View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10279_low_3 (Length: 370)
Name: NF10279_low_3
Description: NF10279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10279_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 30006686 - 30007042
Alignment:
| Q |
1 |
aaattagtaacagtaaaatgtttttcaaaaattgaaataacatgtgatttttcctctatggcaataaattgggttacctgattttatttcaattgccct- |
99 |
Q |
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| T |
30006686 |
aaattagtaacactaaaatgtttttcaaaaattgaaataacatgtgatttttcctctatggcaataaattgggttacctgattttatttcaattgccctt |
30006785 |
T |
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| Q |
100 |
-----------aaacttcttcagattctttctcatgtaaccaaaataaatagatagtaaataaataaatcagctatcaatttcatactcaatttacatat |
188 |
Q |
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| T |
30006786 |
cacttttaattaaacttcttcagattctttctcatgtaaccaaaataaatagatagtaaataaataaatcagctatcgatttcatactcaatttacatat |
30006885 |
T |
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| Q |
189 |
gcttttatggttttgttaagttcagtgaaaatattcatgtagtagctgatatcaattataattttaattttttgttagggattaacacgagcttgcnnnn |
288 |
Q |
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| T |
30006886 |
gctttt--------gttaagttcagtgaaaatattcatgtagtagctgatatcaattataagtttaattttttgttagggattaacacgagcttgcaaaa |
30006977 |
T |
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| Q |
289 |
nnnccagtaaagccctcgatgaggttttggagatgataataacagagcacgaacagactactaat |
353 |
Q |
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| T |
30006978 |
aaaccagtaaagccctcgatgaggttttggagatgataataacagagcacgaacagactactaat |
30007042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 200 - 353
Target Start/End: Original strand, 30000784 - 30000932
Alignment:
| Q |
200 |
tttgttaagttcagtgaaaatattcatgtagtagctgatatcaattataattttaattttttgttagggattaacacgagcttgcnnnnnnnccagtaaa |
299 |
Q |
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| T |
30000784 |
tttgttaagttcaatgaaaatattcatgtagtaactgatatta-ttag----ttaactttttgatagggattaacacaagcttgcaaaaaaaccagtaaa |
30000878 |
T |
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| Q |
300 |
gccctcgatgaggttttggagatgataataacagagcacgaacagactactaat |
353 |
Q |
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| T |
30000879 |
gctcttgatgaagttttggagatgataataacagagcatgaacaaactactaat |
30000932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 353
Target Start/End: Original strand, 29944467 - 29944561
Alignment:
| Q |
259 |
tttgttagggattaacacgagcttgcnnnnnnnccagtaaagccctcgatgaggttttggagatgataataacagagcacgaacagactactaat |
353 |
Q |
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| T |
29944467 |
tttgttagggcttaacacgagcctgcaaaagaaccaacaaagcacttgatgaggtgttggagatgataatatcagagcatgaacaaaccactaat |
29944561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 29964704 - 29964752
Alignment:
| Q |
295 |
gtaaagccctcgatgaggttttggagatgataataacagagcacgaaca |
343 |
Q |
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| T |
29964704 |
gtaaagcacttgatgaggtattggagatgataattacagagcatgaaca |
29964752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 30010094 - 30010046
Alignment:
| Q |
295 |
gtaaagccctcgatgaggttttggagatgataataacagagcacgaaca |
343 |
Q |
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||||||| || |||||||| |||||||||||||| |||||||| ||||| |
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| T |
30010094 |
gtaaagcacttgatgaggtattggagatgataattacagagcatgaaca |
30010046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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