View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10279_low_5 (Length: 304)

Name: NF10279_low_5
Description: NF10279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10279_low_5
NF10279_low_5
[»] chr6 (10 HSPs)
chr6 (16-296)||(15511872-15512156)
chr6 (16-268)||(15985465-15985702)
chr6 (209-268)||(14731002-14731061)
chr6 (43-82)||(16364827-16364866)
chr6 (19-82)||(16332589-16332654)
chr6 (16-69)||(15504917-15504972)
chr6 (209-268)||(30813454-30813513)
chr6 (209-268)||(31705562-31705621)
chr6 (216-266)||(16328762-16328812)
chr6 (158-190)||(16328530-16328562)
[»] chr8 (3 HSPs)
chr8 (209-268)||(13575882-13575941)
chr8 (209-268)||(2968912-2968971)
chr8 (208-268)||(31407423-31407483)
[»] chr3 (7 HSPs)
chr3 (209-268)||(53155103-53155162)
chr3 (209-268)||(566527-566586)
chr3 (209-268)||(2192475-2192534)
chr3 (209-268)||(13701675-13701734)
chr3 (209-262)||(3961455-3961508)
chr3 (209-249)||(11225749-11225789)
chr3 (209-261)||(41598149-41598201)
[»] chr2 (10 HSPs)
chr2 (209-268)||(11798203-11798262)
chr2 (209-268)||(17792854-17792913)
chr2 (223-268)||(44589269-44589314)
chr2 (209-268)||(12890782-12890841)
chr2 (209-268)||(17054729-17054788)
chr2 (209-268)||(17073163-17073222)
chr2 (209-268)||(18089077-18089136)
chr2 (209-268)||(19904886-19904945)
chr2 (209-250)||(13548584-13548625)
chr2 (209-249)||(17304197-17304237)
[»] chr1 (5 HSPs)
chr1 (209-268)||(25032768-25032827)
chr1 (209-268)||(32784476-32784535)
chr1 (209-268)||(15790941-15791000)
chr1 (209-268)||(29938597-29938656)
chr1 (219-268)||(29551440-29551489)
[»] chr4 (4 HSPs)
chr4 (209-249)||(51958743-51958783)
chr4 (209-268)||(3159359-3159418)
chr4 (209-268)||(18502507-18502566)
chr4 (209-268)||(56062371-56062430)
[»] scaffold0056 (1 HSPs)
scaffold0056 (209-268)||(74561-74620)
[»] chr7 (4 HSPs)
chr7 (209-268)||(24988165-24988224)
chr7 (209-268)||(31254796-31254855)
chr7 (219-268)||(43398744-43398793)
chr7 (220-268)||(511663-511711)
[»] chr5 (4 HSPs)
chr5 (213-268)||(6012730-6012785)
chr5 (209-268)||(6281441-6281500)
chr5 (209-268)||(11734510-11734569)
chr5 (211-268)||(17095908-17095965)
[»] scaffold0007 (1 HSPs)
scaffold0007 (209-263)||(201742-201796)
[»] scaffold0321 (1 HSPs)
scaffold0321 (209-268)||(6794-6854)


Alignment Details
Target: chr6 (Bit Score: 161; Significance: 7e-86; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 15512156 - 15511872
Alignment:
Q  16 atttatagacttgttttaaaaaa-cattatgtttatcgatatataaaaatgaatatatacatcacatgtatgnnnnnnnnnnnnnnnttaaggaacccaa 114  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||    
T  15512156 atttatagacttgttttaaaaaaacattatgtttatcgatatataaaaatgaatatatacatcacatgtatgaaaaaaataaaaaaattaaggaacccaa 15512057  T
Q  115 caacgttcgtgtggtctcccacgtgatggccggccatatattcacagattctctttaaactattattttttattttattt---nnnnnnntaataccata 211  Q
    |||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||           |||||||||    
T  15512056 caacgttcatgtggtctcccacatgatggccggccatatattcgcagattctctttaaactattattttttattttatttaaaaaaaaaaaaataccata 15511957  T
Q  212 ttcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaacatcacttcttagacttcacttcttctc 296  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  15511956 ttcattaatttaaattgatacggtaaatcgatacaatacagattcaaagtcactaaacatcacttcttagagttcacttcttctc 15511872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 15985465 - 15985702
Alignment:
Q  16 atttatagacttgttttaaaaaa-catt-atgtttatcgatatataaaaatgaatatatacatcacatgtatgnnnnnnnnnnnnnnnttaaggaaccca 113  Q
    ||||||||||||||| ||| ||| |||| |||||||||||||||||||||||||||||||||||||||| |||               ||||||||||||    
T  15985465 atttatagacttgttctaacaaatcattcatgtttatcgatatataaaaatgaatatatacatcacatgcatgaaaaaaataaaaaaattaaggaaccca 15985564  T
Q  114 acaacgttcgtgtggtctcccacgtgatggccggccatatattcacagattctctttaaactattattttttattttatttnnnnnnntaataccatatt 213  Q
    |||||||||||||||               ||||||||||||||| ||||||||||||||||||||||||||||||| |||         | ||||||||    
T  15985565 acaacgttcgtgtgg---------------ccggccatatattcatagattctctttaaactattattttttattttctttaaaaaat--agaccatatt 15985647  T
Q  214 cattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  15985648 cattaatttaaattgatatagtaaatcgatacaatatagattcaaagtcgctaaa 15985702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 14731061 - 14731002
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||| |||||||||  ||| |||||||||||||| ||||||||||||||||    
T  14731061 atattcattcattcaaattgataacatacatcgatacaatacatattcaaagtcgctaaa 14731002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 16364827 - 16364866
Alignment:
Q  43 atgtttatcgatatataaaaatgaatatatacatcacatg 82  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  16364827 atgtttatcgatatagaaaaatgaatatatacatcacatg 16364866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 16332589 - 16332654
Alignment:
Q  19 tatagacttgttttaaaaaa-catt-atgtttatcgatatataaaaatgaatatatacatcacatg 82  Q
    |||||||||||| ||| ||| |||| || |||||||||||| ||||||||||||||||||||||||    
T  16332589 tatagacttgttctaagaaatcattcatttttatcgatatagaaaaatgaatatatacatcacatg 16332654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 15504972 - 15504917
Alignment:
Q  16 atttatagacttgttttaaaaaa-catt-atgtttatcgatatataaaaatgaata 69  Q
    ||||||||||||||| ||| ||| |||| |||||||||||||||||||||||||||    
T  15504972 atttatagacttgttctaacaaatcattcatgtttatcgatatataaaaatgaata 15504917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 30813513 - 30813454
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||| ||||||||| | || |||||||||||||| ||||||| ||||||||    
T  30813513 atattcattcattcaaattgatagagtacatcgatacaatacaaattcaaattcgctaaa 30813454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 31705621 - 31705562
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||||||||||||| | || |||||||||||||| ||||||| | ||||||    
T  31705621 atattcattcatttaaattgatagagtacatcgatacaatacaaattcaaattggctaaa 31705562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 16328762 - 16328812
Alignment:
Q  216 ttaatttaaattgatataataaatcgatacaatacagattcaaagtcgcta 266  Q
    |||||||||||||||| | || ||| |||||||||| ||||||||||||||    
T  16328762 ttaatttaaattgatagagtacatccatacaatacaaattcaaagtcgcta 16328812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 16328530 - 16328562
Alignment:
Q  158 acagattctctttaaactattattttttatttt 190  Q
    |||||| ||||||||||||||||||||||||||    
T  16328530 acagatgctctttaaactattattttttatttt 16328562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 13575882 - 13575941
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||||||||||||| | || |||||||||||||| || |||||||||||||    
T  13575882 atattcattcatttaaattgatagagtacatcgatacaatacatatccaaagtcgctaaa 13575941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 2968971 - 2968912
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||| ||||||||| | || |||||||||||||| ||||||||||| ||||    
T  2968971 atattcattcattcaaattgatagagtacatcgatacaatacatattcaaagtcgttaaa 2968912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 31407423 - 31407483
Alignment:
Q  208 catattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||| |||| ||| ||||||||||| || || ||||||||||| ||||||| ||||||||    
T  31407423 catatccattcattcaaattgatatagtacattgatacaatacaaattcaaattcgctaaa 31407483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 53155103 - 53155162
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||||||||||||| | || |||||||||||||| ||||||| ||||||||    
T  53155103 atattcattcatttaaattgatagagtacatcgatacaatacaaattcaaattcgctaaa 53155162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 566586 - 566527
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||||| | |||||| || | || |||||||||||||| ||||||||||||||||    
T  566586 atattcattaactcaaattgttaaagtatatcgatacaatacaaattcaaagtcgctaaa 566527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 2192534 - 2192475
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||| ||||||||| | || |||||||||||||| ||||||| ||||||||    
T  2192534 atattcattcattcaaattgatagagtacatcgatacaatacaaattcaaattcgctaaa 2192475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 13701675 - 13701734
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||| ||||||||| | || |||||||||||||| ||||||| ||||||||    
T  13701675 atattcattcattcaaattgatagagtacatcgatacaatacaaattcaaattcgctaaa 13701734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 3961455 - 3961508
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtc 262  Q
    ||||||||| ||| ||||||||| | || |||||||||||||| ||||||||||    
T  3961455 atattcatttattcaaattgataaagtatatcgatacaatacaaattcaaagtc 3961508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 11225789 - 11225749
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaata 249  Q
    ||||||||| ||| |||||||||||||| ||||||||||||    
T  11225789 atattcattcattcaaattgatataatatatcgatacaata 11225749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 41598149 - 41598201
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagt 261  Q
    ||||||||| ||||||||||||||| || ||| |||| ||||| |||||||||    
T  41598149 atattcatttatttaaattgatatagtacatcaatacgatacaaattcaaagt 41598201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 11798203 - 11798262
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||||||||||||| | || ||||||||||| || ||||||||||||||||    
T  11798203 atattcattcatttaaattgatagagtacatcgatacaattcaaattcaaagtcgctaaa 11798262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 17792913 - 17792854
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||||||| ||||||||| | || |||||||||||||| ||||||||||| ||||    
T  17792913 atattcattaattcaaattgataaagtacatcgatacaatacaaattcaaagtcgttaaa 17792854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 44589314 - 44589269
Alignment:
Q  223 aaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||||||    
T  44589314 aaattgatagaataaatcgatacaatacaaattcaaattcgctaaa 44589269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 12890782 - 12890841
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||||||| ||||||||| | || |||||||||||||| || |||| ||||||||    
T  12890782 atattcattaattcaaattgatagagtacatcgatacaatacaaatccaaattcgctaaa 12890841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 17054729 - 17054788
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||||||||||||||| || | |||||||||| | ||| ||||||||||||    
T  17054729 atattcatttatttaaattgatatattacaccgatacaataaaaatttaaagtcgctaaa 17054788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 17073163 - 17073222
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    |||||| || ||||||||||||||| || | |||||||||||| ||| ||||||||||||    
T  17073163 atattcttttatttaaattgatatattacaccgatacaatacaaatttaaagtcgctaaa 17073222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 18089077 - 18089136
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||| ||||||||||| || |||||||||||||| || |||| ||||||||    
T  18089077 atattcattcattcaaattgatatagtacatcgatacaatacaaatccaaattcgctaaa 18089136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 19904945 - 19904886
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||||||||||||||| || ||||||| |||||| ||||||| | ||||||    
T  19904945 atattcattcatttaaattgatatagtacatcgatataatacaaattcaaaattgctaaa 19904886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 13548584 - 13548625
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatac 250  Q
    ||||||||| ||||||||||||||| || |||||||||||||    
T  13548584 atattcattcatttaaattgatatagtacatcgatacaatac 13548625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 17304197 - 17304237
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaata 249  Q
    ||||||||| ||| |||||||||||||| ||||||||||||    
T  17304197 atattcatttattcaaattgatataatatatcgatacaata 17304237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 25032768 - 25032827
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||| ||||||||| | || |||||||||||||| ||||||||||||||||    
T  25032768 atattcattcattcaaattgatagagtacatcgatacaatacaaattcaaagtcgctaaa 25032827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 32784535 - 32784476
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||||||| ||||||||| | || |||||||||||||| ||||||| ||||||||    
T  32784535 atattcattaattcaaattgatagagtacatcgatacaatacaaattcaaattcgctaaa 32784476  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 15790941 - 15791000
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||| ||||||||| | || |||||||||||||| ||||||| ||||||||    
T  15790941 atattcatttattcaaattgataaagtacatcgatacaatacaaattcaaattcgctaaa 15791000  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 29938656 - 29938597
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| |||||| || ||| | || |||||||||||||| ||||||||||||||||    
T  29938656 atattcattcatttaagtttatagagtacatcgatacaatacaaattcaaagtcgctaaa 29938597  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 29551440 - 29551489
Alignment:
Q  219 atttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||||||| | || ||||||||||||||  |||||||||||||||    
T  29551440 atttaaattgatagattacatcgatacaatacaatttcaaagtcgctaaa 29551489  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 51958783 - 51958743
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaata 249  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  51958783 atattcatttatttaaattgataaaataaatcgatacaata 51958743  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 3159418 - 3159359
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||| ||||||||| | || |||||||||||||| |||||||||| |||||    
T  3159418 atattcattcattcaaattgataaagtacatcgatacaatacaaattcaaagtcactaaa 3159359  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 18502507 - 18502566
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||||||||||||| | || |||||||||||||| || |||| ||||||||    
T  18502507 atattcattcatttaaattgatagagtacatcgatacaatacaaatccaaattcgctaaa 18502566  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 56062430 - 56062371
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||| ||||||||||| || ||  |||||||||| ||||||||||||||||    
T  56062430 atattcattcattaaaattgatatagtacattcatacaatacaaattcaaagtcgctaaa 56062371  T

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Target: scaffold0056 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 74620 - 74561
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||||||||||||| | || |||||||||||||| || |||| ||||||||    
T  74620 atattcatttatttaaattgatagagtacatcgatacaatacaaatccaaattcgctaaa 74561  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 24988165 - 24988224
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||||||||||||| |||| ||||||| |||||| || |||| ||||||||    
T  24988165 atattcattcatttaaattgatagaatacatcgatataatacaaatccaaattcgctaaa 24988224  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 31254796 - 31254855
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||| ||||||||| | || |||||||||||||| ||||||||| ||||||    
T  31254796 atattcattcattcaaattgatagattacatcgatacaatacaaattcaaagttgctaaa 31254855  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 43398793 - 43398744
Alignment:
Q  219 atttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||||  ||||| ||||||||||| ||||||||||||||||    
T  43398793 atttaaattaatatggtaaattgatacaatacaaattcaaagtcgctaaa 43398744  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 511711 - 511663
Alignment:
Q  220 tttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    |||||||||||||| |  ||| |||||||||| ||||||||||||||||    
T  511711 tttaaattgatatagttcatcaatacaatacaaattcaaagtcgctaaa 511663  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 6012730 - 6012785
Alignment:
Q  213 tcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||||||||||||| | || ||  |||||||||| ||||||||||||||||    
T  6012730 tcattaatttaaattgatagagtacattaatacaatacaaattcaaagtcgctaaa 6012785  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 6281500 - 6281441
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||| ||||||||| | || |||||||||||||| ||||||| ||||||||    
T  6281500 atattcattcattcaaattgatagagtatatcgatacaatacaaattcaaattcgctaaa 6281441  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 11734510 - 11734569
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| ||| ||||||||| | || |||||||||||||| ||||||| ||||||||    
T  11734510 atattcattcattcaaattgataaagtacatcgatacaatacaaattcaaattcgctaaa 11734569  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 17095908 - 17095965
Alignment:
Q  211 attcattaatttaaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||| ||| ||||||||| | || |||||||||||||| ||||||| ||||||||    
T  17095908 attcattcattcaaattgatagagtacatcgatacaatacaaattcaaattcgctaaa 17095965  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 201742 - 201796
Alignment:
Q  209 atattcattaatttaaattgatataataaatcgatacaatacagattcaaagtcg 263  Q
    |||| |||| ||||||||||||| | |||||| |||||||||| |||||||||||    
T  201742 atatacattcatttaaattgatagagtaaatcaatacaatacaaattcaaagtcg 201796  T

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Target: scaffold0321 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 6794 - 6854
Alignment:
Q  209 atattcattaattt-aaattgatataataaatcgatacaatacagattcaaagtcgctaaa 268  Q
    ||||||||| |||| ||||||||| | || |||||||||||||| ||||||| ||||||||    
T  6794 atattcattcatttcaaattgatagagtacatcgatacaatacaaattcaaattcgctaaa 6854  T

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