View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10279_low_7 (Length: 240)
Name: NF10279_low_7
Description: NF10279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10279_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 51214027 - 51214252
Alignment:
| Q |
1 |
attcacatggaagtaggatggtttgataaagctgagaattcaagtggtgcgctgggtgcaaggctgtcaactgatgctgctttgattcgaactttggttg |
100 |
Q |
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| T |
51214027 |
attcacatggaagtaggatggtttgataaagctgagaattcaagtggtgcgcttggtgcaaggctgtcaactgatgctgcttcgattcgaactttggttg |
51214126 |
T |
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| Q |
101 |
gtgacgcactcggtttgcttgttcaagatatctctacagttattacagccttggtaatttcctttcaggcaaattggcagctttctctcatcattcttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214127 |
gtgacgcactcggtttgcttgttcaagatatctctacagttattacagccttggtaatttcctttcaggcaaattggcagctttctctcatcattcttgt |
51214226 |
T |
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| Q |
201 |
tttgttgcctctactattagtaaatg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
51214227 |
tttgttgcctctactattagtaaatg |
51214252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 51200865 - 51200982
Alignment:
| Q |
2 |
ttcacatggaagtaggatggtttgataaagctgagaattcaagtggtgcgctgggtgcaaggctgtcaactgatgctgctttgattcgaactttggttgg |
101 |
Q |
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|||| |||||||| | ||||||||| |||||||| |||||||||| || | || |||||||| || || ||||| |||| ||||| |||||||||| |
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| T |
51200865 |
ttcatatggaagtgagctggtttgatgaagctgagcattcaagtggcgcaattggagcaaggctctctacagatgcagcttcagttcgagctttggttgg |
51200964 |
T |
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| Q |
102 |
tgacgcactcggtttgct |
119 |
Q |
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||| |||||||||||||| |
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| T |
51200965 |
tgatgcactcggtttgct |
51200982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 131
Target Start/End: Original strand, 51158071 - 51158200
Alignment:
| Q |
2 |
ttcacatggaagtaggatggtttgataaagctgagaattcaagtggtgcgctgggtgcaaggctgtcaactgatgctgctttgattcgaactttggttgg |
101 |
Q |
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| T |
51158071 |
ttcacatggaagtaagttggtttgatgaggctgagcattcaagcggagcacttggagcaaggctctccactgatgcagcttcagttagagctctggttgg |
51158170 |
T |
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| Q |
102 |
tgacgcactcggtttgcttgttcaagatat |
131 |
Q |
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|| ||||| |||||||| |||||| |||| |
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| T |
51158171 |
ggatgcacttggtttgctggttcaaaatat |
51158200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 49736083 - 49735858
Alignment:
| Q |
1 |
attcacatggaagtaggatggtttgataaagctgagaattcaagtggtgcgctgggtgcaaggctgtcaactgatgctgctttgattcgaactttggttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
49736083 |
attcacatggaagtaggatggtttgataaagctgagaattcaagtggtgcacttggtgcaaggctgtcaaccgatgctgcttcgattcgaactttggttg |
49735984 |
T |
|
| Q |
101 |
gtgacgcactcggtttgcttgttcaagatatctctacagttattacagccttggtaatttcctttcaggcaaattggcagctttctctcatcattcttgt |
200 |
Q |
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| || |||||||||||||| ||||||||||| | || || |||||||||||||||||| |||| || | | |||||||||||||||||||||||||| |
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| T |
49735983 |
gggatgcactcggtttgctagttcaagatattgccactgtaattacagccttggtaattggctttgagactagctggcagctttctctcatcattcttgt |
49735884 |
T |
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| Q |
201 |
tttgttgcctctactattagtaaatg |
226 |
Q |
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|||| | |||||||| |||||||||| |
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| T |
49735883 |
tttgctacctctactgttagtaaatg |
49735858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 1478353 - 1478407
Alignment:
| Q |
58 |
gcaaggctgtcaactgatgctgctttgattcgaactttggttggtgacgcactcg |
112 |
Q |
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||||||||||| |||||||| |||||||||||| | |||| |||||| ||||||| |
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| T |
1478353 |
gcaaggctgtctactgatgcagctttgattcgagcgttggatggtgatgcactcg |
1478407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 19179973 - 19180027
Alignment:
| Q |
58 |
gcaaggctgtcaactgatgctgctttgattcgaactttggttggtgacgcactcg |
112 |
Q |
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||||||||||| |||||||| |||||||||||| | |||| |||||| ||||||| |
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| T |
19179973 |
gcaaggctgtctactgatgcagctttgattcgagcgttggatggtgatgcactcg |
19180027 |
T |
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